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Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method

Advances in therapeutic neuromodulation devices have enabled concurrent stimulation and electrophysiology in the central nervous system. However, stimulation artifacts often obscure the sensed underlying neural activity. Here, we develop a method, termed Period-based Artifact Reconstruction and Remo...

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Autores principales: Dastin-van Rijn, Evan M., Provenza, Nicole R., Calvert, Jonathan S., Gilron, Ro'ee, Allawala, Anusha B., Darie, Radu, Syed, Sohail, Matteson, Evan, Vogt, Gregory S., Avendano-Ortega, Michelle, Vasquez, Ana C., Ramakrishnan, Nithya, Oswalt, Denise N., Bijanki, Kelly R., Wilt, Robert, Starr, Philip A., Sheth, Sameer A., Goodman, Wayne K., Harrison, Matthew T., Borton, David A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443190/
https://www.ncbi.nlm.nih.gov/pubmed/34532716
http://dx.doi.org/10.1016/j.crmeth.2021.100010
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author Dastin-van Rijn, Evan M.
Provenza, Nicole R.
Calvert, Jonathan S.
Gilron, Ro'ee
Allawala, Anusha B.
Darie, Radu
Syed, Sohail
Matteson, Evan
Vogt, Gregory S.
Avendano-Ortega, Michelle
Vasquez, Ana C.
Ramakrishnan, Nithya
Oswalt, Denise N.
Bijanki, Kelly R.
Wilt, Robert
Starr, Philip A.
Sheth, Sameer A.
Goodman, Wayne K.
Harrison, Matthew T.
Borton, David A.
author_facet Dastin-van Rijn, Evan M.
Provenza, Nicole R.
Calvert, Jonathan S.
Gilron, Ro'ee
Allawala, Anusha B.
Darie, Radu
Syed, Sohail
Matteson, Evan
Vogt, Gregory S.
Avendano-Ortega, Michelle
Vasquez, Ana C.
Ramakrishnan, Nithya
Oswalt, Denise N.
Bijanki, Kelly R.
Wilt, Robert
Starr, Philip A.
Sheth, Sameer A.
Goodman, Wayne K.
Harrison, Matthew T.
Borton, David A.
author_sort Dastin-van Rijn, Evan M.
collection PubMed
description Advances in therapeutic neuromodulation devices have enabled concurrent stimulation and electrophysiology in the central nervous system. However, stimulation artifacts often obscure the sensed underlying neural activity. Here, we develop a method, termed Period-based Artifact Reconstruction and Removal Method (PARRM), to remove stimulation artifacts from neural recordings by leveraging the exact period of stimulation to construct and subtract a high-fidelity template of the artifact. Benchtop saline experiments, computational simulations, five unique in vivo paradigms across animal and human studies, and an obscured movement biomarker are used for validation. Performance is found to exceed that of state-of-the-art filters in recovering complex signals without introducing contamination. PARRM has several advantages: (1) it is superior in signal recovery; (2) it is easily adaptable to several neurostimulation paradigms; and (3) it has low complexity for future on-device implementation. Real-time artifact removal via PARRM will enable unbiased exploration and detection of neural biomarkers to enhance efficacy of closed-loop therapies.
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spelling pubmed-84431902021-09-15 Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method Dastin-van Rijn, Evan M. Provenza, Nicole R. Calvert, Jonathan S. Gilron, Ro'ee Allawala, Anusha B. Darie, Radu Syed, Sohail Matteson, Evan Vogt, Gregory S. Avendano-Ortega, Michelle Vasquez, Ana C. Ramakrishnan, Nithya Oswalt, Denise N. Bijanki, Kelly R. Wilt, Robert Starr, Philip A. Sheth, Sameer A. Goodman, Wayne K. Harrison, Matthew T. Borton, David A. Cell Rep Methods Article Advances in therapeutic neuromodulation devices have enabled concurrent stimulation and electrophysiology in the central nervous system. However, stimulation artifacts often obscure the sensed underlying neural activity. Here, we develop a method, termed Period-based Artifact Reconstruction and Removal Method (PARRM), to remove stimulation artifacts from neural recordings by leveraging the exact period of stimulation to construct and subtract a high-fidelity template of the artifact. Benchtop saline experiments, computational simulations, five unique in vivo paradigms across animal and human studies, and an obscured movement biomarker are used for validation. Performance is found to exceed that of state-of-the-art filters in recovering complex signals without introducing contamination. PARRM has several advantages: (1) it is superior in signal recovery; (2) it is easily adaptable to several neurostimulation paradigms; and (3) it has low complexity for future on-device implementation. Real-time artifact removal via PARRM will enable unbiased exploration and detection of neural biomarkers to enhance efficacy of closed-loop therapies. Elsevier 2021-06-01 /pmc/articles/PMC8443190/ /pubmed/34532716 http://dx.doi.org/10.1016/j.crmeth.2021.100010 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Dastin-van Rijn, Evan M.
Provenza, Nicole R.
Calvert, Jonathan S.
Gilron, Ro'ee
Allawala, Anusha B.
Darie, Radu
Syed, Sohail
Matteson, Evan
Vogt, Gregory S.
Avendano-Ortega, Michelle
Vasquez, Ana C.
Ramakrishnan, Nithya
Oswalt, Denise N.
Bijanki, Kelly R.
Wilt, Robert
Starr, Philip A.
Sheth, Sameer A.
Goodman, Wayne K.
Harrison, Matthew T.
Borton, David A.
Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
title Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
title_full Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
title_fullStr Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
title_full_unstemmed Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
title_short Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
title_sort uncovering biomarkers during therapeutic neuromodulation with parrm: period-based artifact reconstruction and removal method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443190/
https://www.ncbi.nlm.nih.gov/pubmed/34532716
http://dx.doi.org/10.1016/j.crmeth.2021.100010
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