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Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method
Advances in therapeutic neuromodulation devices have enabled concurrent stimulation and electrophysiology in the central nervous system. However, stimulation artifacts often obscure the sensed underlying neural activity. Here, we develop a method, termed Period-based Artifact Reconstruction and Remo...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443190/ https://www.ncbi.nlm.nih.gov/pubmed/34532716 http://dx.doi.org/10.1016/j.crmeth.2021.100010 |
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author | Dastin-van Rijn, Evan M. Provenza, Nicole R. Calvert, Jonathan S. Gilron, Ro'ee Allawala, Anusha B. Darie, Radu Syed, Sohail Matteson, Evan Vogt, Gregory S. Avendano-Ortega, Michelle Vasquez, Ana C. Ramakrishnan, Nithya Oswalt, Denise N. Bijanki, Kelly R. Wilt, Robert Starr, Philip A. Sheth, Sameer A. Goodman, Wayne K. Harrison, Matthew T. Borton, David A. |
author_facet | Dastin-van Rijn, Evan M. Provenza, Nicole R. Calvert, Jonathan S. Gilron, Ro'ee Allawala, Anusha B. Darie, Radu Syed, Sohail Matteson, Evan Vogt, Gregory S. Avendano-Ortega, Michelle Vasquez, Ana C. Ramakrishnan, Nithya Oswalt, Denise N. Bijanki, Kelly R. Wilt, Robert Starr, Philip A. Sheth, Sameer A. Goodman, Wayne K. Harrison, Matthew T. Borton, David A. |
author_sort | Dastin-van Rijn, Evan M. |
collection | PubMed |
description | Advances in therapeutic neuromodulation devices have enabled concurrent stimulation and electrophysiology in the central nervous system. However, stimulation artifacts often obscure the sensed underlying neural activity. Here, we develop a method, termed Period-based Artifact Reconstruction and Removal Method (PARRM), to remove stimulation artifacts from neural recordings by leveraging the exact period of stimulation to construct and subtract a high-fidelity template of the artifact. Benchtop saline experiments, computational simulations, five unique in vivo paradigms across animal and human studies, and an obscured movement biomarker are used for validation. Performance is found to exceed that of state-of-the-art filters in recovering complex signals without introducing contamination. PARRM has several advantages: (1) it is superior in signal recovery; (2) it is easily adaptable to several neurostimulation paradigms; and (3) it has low complexity for future on-device implementation. Real-time artifact removal via PARRM will enable unbiased exploration and detection of neural biomarkers to enhance efficacy of closed-loop therapies. |
format | Online Article Text |
id | pubmed-8443190 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-84431902021-09-15 Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method Dastin-van Rijn, Evan M. Provenza, Nicole R. Calvert, Jonathan S. Gilron, Ro'ee Allawala, Anusha B. Darie, Radu Syed, Sohail Matteson, Evan Vogt, Gregory S. Avendano-Ortega, Michelle Vasquez, Ana C. Ramakrishnan, Nithya Oswalt, Denise N. Bijanki, Kelly R. Wilt, Robert Starr, Philip A. Sheth, Sameer A. Goodman, Wayne K. Harrison, Matthew T. Borton, David A. Cell Rep Methods Article Advances in therapeutic neuromodulation devices have enabled concurrent stimulation and electrophysiology in the central nervous system. However, stimulation artifacts often obscure the sensed underlying neural activity. Here, we develop a method, termed Period-based Artifact Reconstruction and Removal Method (PARRM), to remove stimulation artifacts from neural recordings by leveraging the exact period of stimulation to construct and subtract a high-fidelity template of the artifact. Benchtop saline experiments, computational simulations, five unique in vivo paradigms across animal and human studies, and an obscured movement biomarker are used for validation. Performance is found to exceed that of state-of-the-art filters in recovering complex signals without introducing contamination. PARRM has several advantages: (1) it is superior in signal recovery; (2) it is easily adaptable to several neurostimulation paradigms; and (3) it has low complexity for future on-device implementation. Real-time artifact removal via PARRM will enable unbiased exploration and detection of neural biomarkers to enhance efficacy of closed-loop therapies. Elsevier 2021-06-01 /pmc/articles/PMC8443190/ /pubmed/34532716 http://dx.doi.org/10.1016/j.crmeth.2021.100010 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Dastin-van Rijn, Evan M. Provenza, Nicole R. Calvert, Jonathan S. Gilron, Ro'ee Allawala, Anusha B. Darie, Radu Syed, Sohail Matteson, Evan Vogt, Gregory S. Avendano-Ortega, Michelle Vasquez, Ana C. Ramakrishnan, Nithya Oswalt, Denise N. Bijanki, Kelly R. Wilt, Robert Starr, Philip A. Sheth, Sameer A. Goodman, Wayne K. Harrison, Matthew T. Borton, David A. Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method |
title | Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method |
title_full | Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method |
title_fullStr | Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method |
title_full_unstemmed | Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method |
title_short | Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method |
title_sort | uncovering biomarkers during therapeutic neuromodulation with parrm: period-based artifact reconstruction and removal method |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443190/ https://www.ncbi.nlm.nih.gov/pubmed/34532716 http://dx.doi.org/10.1016/j.crmeth.2021.100010 |
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