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Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites

[Image: see text] We present a methodology to compute, at reduced computational cost, Gibbs free energies, enthalpies, and entropies of adsorption from molecular dynamics. We calculate vibrational partition functions from vibrational energies, which we obtain from the vibrational density of states b...

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Autores principales: Galimberti, Daria Ruth, Sauer, Joachim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8444336/
https://www.ncbi.nlm.nih.gov/pubmed/34459582
http://dx.doi.org/10.1021/acs.jctc.1c00519
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author Galimberti, Daria Ruth
Sauer, Joachim
author_facet Galimberti, Daria Ruth
Sauer, Joachim
author_sort Galimberti, Daria Ruth
collection PubMed
description [Image: see text] We present a methodology to compute, at reduced computational cost, Gibbs free energies, enthalpies, and entropies of adsorption from molecular dynamics. We calculate vibrational partition functions from vibrational energies, which we obtain from the vibrational density of states by projection on the normal modes. The use of a set of well-chosen reference structures along the trajectories accounts for the anharmonicities of the modes. For the adsorption of methane, ethane, and propane in the H-CHA zeolite, we limit our treatment to a set of vibrational modes localized at the adsorption site (zeolitic OH group) and the alkane molecule interacting with it. Only two short trajectories (1–20 ps) are required to reach convergence (<1 kJ/mol) for the thermodynamic functions. The mean absolute deviations from the experimentally measured values are 2.6, 2.8, and 4.7 kJ/mol for the Gibbs free energy, the enthalpy, and the entropy term (−TΔS), respectively. In particular, the entropy terms show a major improvement compared to the harmonic approximation and almost reach the accuracy of the previous use of anharmonic frequencies obtained with curvilinear distortions of individual modes. The thermodynamic functions so obtained follow the trend of the experimental values for methane, ethane, and propane, and the Gibbs free energy of adsorption at experimental conditions is correctly predicted to change from positive for methane (5.9 kJ/mol) to negative for ethane (−4.8 kJ/mol) and propane (−7.1 kJ/mol).
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spelling pubmed-84443362021-09-20 Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites Galimberti, Daria Ruth Sauer, Joachim J Chem Theory Comput [Image: see text] We present a methodology to compute, at reduced computational cost, Gibbs free energies, enthalpies, and entropies of adsorption from molecular dynamics. We calculate vibrational partition functions from vibrational energies, which we obtain from the vibrational density of states by projection on the normal modes. The use of a set of well-chosen reference structures along the trajectories accounts for the anharmonicities of the modes. For the adsorption of methane, ethane, and propane in the H-CHA zeolite, we limit our treatment to a set of vibrational modes localized at the adsorption site (zeolitic OH group) and the alkane molecule interacting with it. Only two short trajectories (1–20 ps) are required to reach convergence (<1 kJ/mol) for the thermodynamic functions. The mean absolute deviations from the experimentally measured values are 2.6, 2.8, and 4.7 kJ/mol for the Gibbs free energy, the enthalpy, and the entropy term (−TΔS), respectively. In particular, the entropy terms show a major improvement compared to the harmonic approximation and almost reach the accuracy of the previous use of anharmonic frequencies obtained with curvilinear distortions of individual modes. The thermodynamic functions so obtained follow the trend of the experimental values for methane, ethane, and propane, and the Gibbs free energy of adsorption at experimental conditions is correctly predicted to change from positive for methane (5.9 kJ/mol) to negative for ethane (−4.8 kJ/mol) and propane (−7.1 kJ/mol). American Chemical Society 2021-08-30 2021-09-14 /pmc/articles/PMC8444336/ /pubmed/34459582 http://dx.doi.org/10.1021/acs.jctc.1c00519 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Galimberti, Daria Ruth
Sauer, Joachim
Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites
title Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites
title_full Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites
title_fullStr Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites
title_full_unstemmed Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites
title_short Chemically Accurate Vibrational Free Energies of Adsorption from Density Functional Theory Molecular Dynamics: Alkanes in Zeolites
title_sort chemically accurate vibrational free energies of adsorption from density functional theory molecular dynamics: alkanes in zeolites
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8444336/
https://www.ncbi.nlm.nih.gov/pubmed/34459582
http://dx.doi.org/10.1021/acs.jctc.1c00519
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