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A multiscale agent-based model of ductal carcinoma in situ

OBJECTIVE: we present a multiscale agent-based model of Ductal Carcinoma in Situ (DCIS) in order to gain a detailed understanding of the cell-scale population dynamics, phenotypic distributions, and the associated interplay of important molecular signaling pathways that are involved in DCIS ductal i...

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Autores principales: Butner, Joseph D., Fuentes, David, Ozpolat, Bulent, Calin, George A., Zhou, Xiaobo, Lowengrub, John, Cristini, Vittorio, Wang, Zhihui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8445608/
https://www.ncbi.nlm.nih.gov/pubmed/31603768
http://dx.doi.org/10.1109/TBME.2019.2938485
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author Butner, Joseph D.
Fuentes, David
Ozpolat, Bulent
Calin, George A.
Zhou, Xiaobo
Lowengrub, John
Cristini, Vittorio
Wang, Zhihui
author_facet Butner, Joseph D.
Fuentes, David
Ozpolat, Bulent
Calin, George A.
Zhou, Xiaobo
Lowengrub, John
Cristini, Vittorio
Wang, Zhihui
author_sort Butner, Joseph D.
collection PubMed
description OBJECTIVE: we present a multiscale agent-based model of Ductal Carcinoma in Situ (DCIS) in order to gain a detailed understanding of the cell-scale population dynamics, phenotypic distributions, and the associated interplay of important molecular signaling pathways that are involved in DCIS ductal invasion into the duct cavity (a process we refer to as duct advance rate here). METHODS: DCIS is modeled mathematically through a hybridized discrete cell-scale model and a continuum molecular scale model, which are explicitly linked through a bidirectional feedback mechanism. RESULTS: we find that duct advance rates occur in two distinct phases, characterized by an early exponential population expansion, followed by a long-term steady linear phase of population expansion, a result that is consistent with other modeling work. We further found that the rates were influenced most strongly by endocrine and paracrine signaling intensity, as well as by the effects of cell density induced quiescence within the DCIS population. CONCLUSION: our model analysis identified a complex interplay between phenotypic diversity that may provide a tumor adaptation mechanism to overcome proliferation limiting conditions, allowing for dynamic shifts in phenotypic populations in response to variation in molecular signaling intensity. Further, sensitivity analysis determined DCIS axial advance rates and calcification rates were most sensitive to cell cycle time variation. SIGNIFICANCE: this model may serve as a useful tool to study the cell-scale dynamics involved in DCIS initiation and intraductal invasion, and may provide insights into promising areas of future experimental research.
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spelling pubmed-84456082021-09-16 A multiscale agent-based model of ductal carcinoma in situ Butner, Joseph D. Fuentes, David Ozpolat, Bulent Calin, George A. Zhou, Xiaobo Lowengrub, John Cristini, Vittorio Wang, Zhihui IEEE Trans Biomed Eng Article OBJECTIVE: we present a multiscale agent-based model of Ductal Carcinoma in Situ (DCIS) in order to gain a detailed understanding of the cell-scale population dynamics, phenotypic distributions, and the associated interplay of important molecular signaling pathways that are involved in DCIS ductal invasion into the duct cavity (a process we refer to as duct advance rate here). METHODS: DCIS is modeled mathematically through a hybridized discrete cell-scale model and a continuum molecular scale model, which are explicitly linked through a bidirectional feedback mechanism. RESULTS: we find that duct advance rates occur in two distinct phases, characterized by an early exponential population expansion, followed by a long-term steady linear phase of population expansion, a result that is consistent with other modeling work. We further found that the rates were influenced most strongly by endocrine and paracrine signaling intensity, as well as by the effects of cell density induced quiescence within the DCIS population. CONCLUSION: our model analysis identified a complex interplay between phenotypic diversity that may provide a tumor adaptation mechanism to overcome proliferation limiting conditions, allowing for dynamic shifts in phenotypic populations in response to variation in molecular signaling intensity. Further, sensitivity analysis determined DCIS axial advance rates and calcification rates were most sensitive to cell cycle time variation. SIGNIFICANCE: this model may serve as a useful tool to study the cell-scale dynamics involved in DCIS initiation and intraductal invasion, and may provide insights into promising areas of future experimental research. 2019-10-08 2020-05 /pmc/articles/PMC8445608/ /pubmed/31603768 http://dx.doi.org/10.1109/TBME.2019.2938485 Text en https://creativecommons.org/licenses/by/3.0/This work is licensed under a Creative Commons Attribution 3.0 License. For more information, see http://creativecommons.org/licenses/by/3.0/ (https://creativecommons.org/licenses/by/3.0/)
spellingShingle Article
Butner, Joseph D.
Fuentes, David
Ozpolat, Bulent
Calin, George A.
Zhou, Xiaobo
Lowengrub, John
Cristini, Vittorio
Wang, Zhihui
A multiscale agent-based model of ductal carcinoma in situ
title A multiscale agent-based model of ductal carcinoma in situ
title_full A multiscale agent-based model of ductal carcinoma in situ
title_fullStr A multiscale agent-based model of ductal carcinoma in situ
title_full_unstemmed A multiscale agent-based model of ductal carcinoma in situ
title_short A multiscale agent-based model of ductal carcinoma in situ
title_sort multiscale agent-based model of ductal carcinoma in situ
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8445608/
https://www.ncbi.nlm.nih.gov/pubmed/31603768
http://dx.doi.org/10.1109/TBME.2019.2938485
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