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COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet

With the presence of novel coronavirus disease at the end of 2019, several approaches were proposed to help physicians detect the disease, such as using deep learning to recognize lung involvement based on the pattern of pneumonia. These approaches rely on analyzing the CT images and exploring the C...

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Autores principales: Javidi, Malihe, Abbaasi, Saeid, Naybandi Atashi, Sara, Jampour, Mahdi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446042/
https://www.ncbi.nlm.nih.gov/pubmed/34531477
http://dx.doi.org/10.1038/s41598-021-97901-4
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author Javidi, Malihe
Abbaasi, Saeid
Naybandi Atashi, Sara
Jampour, Mahdi
author_facet Javidi, Malihe
Abbaasi, Saeid
Naybandi Atashi, Sara
Jampour, Mahdi
author_sort Javidi, Malihe
collection PubMed
description With the presence of novel coronavirus disease at the end of 2019, several approaches were proposed to help physicians detect the disease, such as using deep learning to recognize lung involvement based on the pattern of pneumonia. These approaches rely on analyzing the CT images and exploring the COVID-19 pathologies in the lung. Most of the successful methods are based on the deep learning technique, which is state-of-the-art. Nevertheless, the big drawback of the deep approaches is their need for many samples, which is not always possible. This work proposes a combined deep architecture that benefits both employed architectures of DenseNet and CapsNet. To more generalize the deep model, we propose a regularization term with much fewer parameters. The network convergence significantly improved, especially when the number of training data is small. We also propose a novel Cost-sensitive loss function for imbalanced data that makes our model feasible for the condition with a limited number of positive data. Our novelties make our approach more intelligent and potent in real-world situations with imbalanced data, popular in hospitals. We analyzed our approach on two publicly available datasets, HUST and COVID-CT, with different protocols. In the first protocol of HUST, we followed the original paper setup and outperformed it. With the second protocol of HUST, we show our approach superiority concerning imbalanced data. Finally, with three different validations of the COVID-CT, we provide evaluations in the presence of a low number of data along with a comparison with state-of-the-art.
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spelling pubmed-84460422021-09-20 COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet Javidi, Malihe Abbaasi, Saeid Naybandi Atashi, Sara Jampour, Mahdi Sci Rep Article With the presence of novel coronavirus disease at the end of 2019, several approaches were proposed to help physicians detect the disease, such as using deep learning to recognize lung involvement based on the pattern of pneumonia. These approaches rely on analyzing the CT images and exploring the COVID-19 pathologies in the lung. Most of the successful methods are based on the deep learning technique, which is state-of-the-art. Nevertheless, the big drawback of the deep approaches is their need for many samples, which is not always possible. This work proposes a combined deep architecture that benefits both employed architectures of DenseNet and CapsNet. To more generalize the deep model, we propose a regularization term with much fewer parameters. The network convergence significantly improved, especially when the number of training data is small. We also propose a novel Cost-sensitive loss function for imbalanced data that makes our model feasible for the condition with a limited number of positive data. Our novelties make our approach more intelligent and potent in real-world situations with imbalanced data, popular in hospitals. We analyzed our approach on two publicly available datasets, HUST and COVID-CT, with different protocols. In the first protocol of HUST, we followed the original paper setup and outperformed it. With the second protocol of HUST, we show our approach superiority concerning imbalanced data. Finally, with three different validations of the COVID-CT, we provide evaluations in the presence of a low number of data along with a comparison with state-of-the-art. Nature Publishing Group UK 2021-09-16 /pmc/articles/PMC8446042/ /pubmed/34531477 http://dx.doi.org/10.1038/s41598-021-97901-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Javidi, Malihe
Abbaasi, Saeid
Naybandi Atashi, Sara
Jampour, Mahdi
COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet
title COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet
title_full COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet
title_fullStr COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet
title_full_unstemmed COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet
title_short COVID-19 early detection for imbalanced or low number of data using a regularized cost-sensitive CapsNet
title_sort covid-19 early detection for imbalanced or low number of data using a regularized cost-sensitive capsnet
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446042/
https://www.ncbi.nlm.nih.gov/pubmed/34531477
http://dx.doi.org/10.1038/s41598-021-97901-4
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