Cargando…

Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis

BACKGROUND: PLEK2 (pleckstrin) could bind to membrane‐bound phosphatidylinositols and further promote cell spread. Recently, several studies have noted the importance of PLEK2 in tumor metastasis. However, the role of PLEK2 in head and neck squamous cell carcinoma (HNSCC) remains to be elucidated. M...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Jingyun, Sun, Zhuang, Wang, Jing, Tian, Qihai, Huang, Runda, Wang, Hanyu, Wang, Xiaohui, Han, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446404/
https://www.ncbi.nlm.nih.gov/pubmed/34331382
http://dx.doi.org/10.1002/cam4.4163
_version_ 1784568864795787264
author Wang, Jingyun
Sun, Zhuang
Wang, Jing
Tian, Qihai
Huang, Runda
Wang, Hanyu
Wang, Xiaohui
Han, Fei
author_facet Wang, Jingyun
Sun, Zhuang
Wang, Jing
Tian, Qihai
Huang, Runda
Wang, Hanyu
Wang, Xiaohui
Han, Fei
author_sort Wang, Jingyun
collection PubMed
description BACKGROUND: PLEK2 (pleckstrin) could bind to membrane‐bound phosphatidylinositols and further promote cell spread. Recently, several studies have noted the importance of PLEK2 in tumor metastasis. However, the role of PLEK2 in head and neck squamous cell carcinoma (HNSCC) remains to be elucidated. METHODS: The PLEK2 expression in HNSCC was identified using Oncomine, Gene Expression Omnibus (GEO), UALCAN databases, and western blot analysis. Prognosis analysis was performed using Kaplan–Meier plotter, DriverDBv3, UALCAN, UCSC Xena, and GEO databases. Single‐cell functional analysis was further performed using the cancerSEA database. The PLEK2‐related co‑expressed genes were identified, and gene set enrichment analysis was performed using LinkedOmics. Furthermore, the top 10 hub genes were identified using the cytoHubba plug‐in of Cytoscape. Then, gene enrichment analysis, pathway activity, and drug sensitivity analyses of the hub genes were performed using the R package “clusterProfiler” and GSCAlite. Finally, the UCSC Xena browser was utilized to explore the hub gene most likely to play a synergic role with PLEK2 in HNSCC. RESULTS: Elevated expression of PLEK2 was observed in HNSCC and even in HNSCC subgroups based on diverse clinicopathological features, portending a poor prognosis in HNSCC. PLEK2 was correlated with metastasis and hypoxia in HNSCC, and the PLEK2‐related co‐expressed genes were mainly involved in the focal adhesion pathway. The top 10 hub genes were primarily enriched in focal adhesion, HPV infection, ECM‐receptor interaction, and PI3K‐AKT signaling pathway, and epithelial–mesenchymal transition pathway was activated. Furthermore, the expression levels of the hub genes were associated with sensitivity and resistance to various small molecules and anti‐cancer drugs. Further study suggested that ITGA3 and PLEK2 might be viewed as inextricably linked in facilitating HNSCC metastasis. CONCLUSIONS: In general, PLEK2 might serve as a potential biomarker for the diagnosis of HNSCC and guide the development of targeted therapies for HNSCC.
format Online
Article
Text
id pubmed-8446404
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-84464042021-09-22 Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis Wang, Jingyun Sun, Zhuang Wang, Jing Tian, Qihai Huang, Runda Wang, Hanyu Wang, Xiaohui Han, Fei Cancer Med Bioinformatics BACKGROUND: PLEK2 (pleckstrin) could bind to membrane‐bound phosphatidylinositols and further promote cell spread. Recently, several studies have noted the importance of PLEK2 in tumor metastasis. However, the role of PLEK2 in head and neck squamous cell carcinoma (HNSCC) remains to be elucidated. METHODS: The PLEK2 expression in HNSCC was identified using Oncomine, Gene Expression Omnibus (GEO), UALCAN databases, and western blot analysis. Prognosis analysis was performed using Kaplan–Meier plotter, DriverDBv3, UALCAN, UCSC Xena, and GEO databases. Single‐cell functional analysis was further performed using the cancerSEA database. The PLEK2‐related co‑expressed genes were identified, and gene set enrichment analysis was performed using LinkedOmics. Furthermore, the top 10 hub genes were identified using the cytoHubba plug‐in of Cytoscape. Then, gene enrichment analysis, pathway activity, and drug sensitivity analyses of the hub genes were performed using the R package “clusterProfiler” and GSCAlite. Finally, the UCSC Xena browser was utilized to explore the hub gene most likely to play a synergic role with PLEK2 in HNSCC. RESULTS: Elevated expression of PLEK2 was observed in HNSCC and even in HNSCC subgroups based on diverse clinicopathological features, portending a poor prognosis in HNSCC. PLEK2 was correlated with metastasis and hypoxia in HNSCC, and the PLEK2‐related co‐expressed genes were mainly involved in the focal adhesion pathway. The top 10 hub genes were primarily enriched in focal adhesion, HPV infection, ECM‐receptor interaction, and PI3K‐AKT signaling pathway, and epithelial–mesenchymal transition pathway was activated. Furthermore, the expression levels of the hub genes were associated with sensitivity and resistance to various small molecules and anti‐cancer drugs. Further study suggested that ITGA3 and PLEK2 might be viewed as inextricably linked in facilitating HNSCC metastasis. CONCLUSIONS: In general, PLEK2 might serve as a potential biomarker for the diagnosis of HNSCC and guide the development of targeted therapies for HNSCC. John Wiley and Sons Inc. 2021-07-30 /pmc/articles/PMC8446404/ /pubmed/34331382 http://dx.doi.org/10.1002/cam4.4163 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Wang, Jingyun
Sun, Zhuang
Wang, Jing
Tian, Qihai
Huang, Runda
Wang, Hanyu
Wang, Xiaohui
Han, Fei
Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
title Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
title_full Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
title_fullStr Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
title_full_unstemmed Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
title_short Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
title_sort expression and prognostic potential of plek2 in head and neck squamous cell carcinoma based on bioinformatics analysis
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446404/
https://www.ncbi.nlm.nih.gov/pubmed/34331382
http://dx.doi.org/10.1002/cam4.4163
work_keys_str_mv AT wangjingyun expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT sunzhuang expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT wangjing expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT tianqihai expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT huangrunda expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT wanghanyu expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT wangxiaohui expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis
AT hanfei expressionandprognosticpotentialofplek2inheadandnecksquamouscellcarcinomabasedonbioinformaticsanalysis