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Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA

BACKGROUND: The composition of the population of immune‐related long non‐coding ribonucleic acid (irlncRNA) generates a signature, irrespective of expression level, with potential value in predicting the survival status of patients with invasive breast carcinoma. METHODS: The current study uses univ...

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Autores principales: Shen, Shuang, Chen, Xin, Hu, Xiaochi, Huo, Jinlong, Luo, Libo, Zhou, Xuezhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446415/
https://www.ncbi.nlm.nih.gov/pubmed/34378851
http://dx.doi.org/10.1002/cam4.4189
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author Shen, Shuang
Chen, Xin
Hu, Xiaochi
Huo, Jinlong
Luo, Libo
Zhou, Xuezhi
author_facet Shen, Shuang
Chen, Xin
Hu, Xiaochi
Huo, Jinlong
Luo, Libo
Zhou, Xuezhi
author_sort Shen, Shuang
collection PubMed
description BACKGROUND: The composition of the population of immune‐related long non‐coding ribonucleic acid (irlncRNA) generates a signature, irrespective of expression level, with potential value in predicting the survival status of patients with invasive breast carcinoma. METHODS: The current study uses univariate analysis to identify differentially expressed irlncRNA (DEirlncRNA) pairs from RNA‐Seq data from The Cancer Genome Atlas (TCGA). 36 pairs of DEirlncRNA pairs were identified. Using various algorithms to construct a model, we have compared the area under the curve and calculated the 5‐year curve of Akaike information criterion (AIC) values, which allows determination of the threshold indicating the maximum value for differentiation. Through cut‐off point to establish the optimal model for distinguishing high‐risk or low‐risk groups among breast cancer patients. We assigned individual patients with invasive breast cancer to either high risk or low risk groups depending on the cut‐off point, re‐evaluated the tumor immune cell infiltration, the effectiveness of chemotherapy, immunosuppressive biomarkers, and immunotherapy. RESULTS: After re‐assessing patients according to the threshold, we demonstrated an effective means of distinguish the severity of the disease, and identified patients with different clinicopathological characteristics, specific tumor immune infiltration states, high sensitivity to chemotherapy,wellpredicted response to immunotherapy and thus a more favorable survival outcome. CONCLUSIONS: The current study presents novel findings regarding the use of irlncRNA without the need to predict precise expression levels in the prognosis of breast cancer patients and to indicate their suitability for anti‐tumor immunotherapy.
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spelling pubmed-84464152021-09-22 Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA Shen, Shuang Chen, Xin Hu, Xiaochi Huo, Jinlong Luo, Libo Zhou, Xuezhi Cancer Med Bioinformatics BACKGROUND: The composition of the population of immune‐related long non‐coding ribonucleic acid (irlncRNA) generates a signature, irrespective of expression level, with potential value in predicting the survival status of patients with invasive breast carcinoma. METHODS: The current study uses univariate analysis to identify differentially expressed irlncRNA (DEirlncRNA) pairs from RNA‐Seq data from The Cancer Genome Atlas (TCGA). 36 pairs of DEirlncRNA pairs were identified. Using various algorithms to construct a model, we have compared the area under the curve and calculated the 5‐year curve of Akaike information criterion (AIC) values, which allows determination of the threshold indicating the maximum value for differentiation. Through cut‐off point to establish the optimal model for distinguishing high‐risk or low‐risk groups among breast cancer patients. We assigned individual patients with invasive breast cancer to either high risk or low risk groups depending on the cut‐off point, re‐evaluated the tumor immune cell infiltration, the effectiveness of chemotherapy, immunosuppressive biomarkers, and immunotherapy. RESULTS: After re‐assessing patients according to the threshold, we demonstrated an effective means of distinguish the severity of the disease, and identified patients with different clinicopathological characteristics, specific tumor immune infiltration states, high sensitivity to chemotherapy,wellpredicted response to immunotherapy and thus a more favorable survival outcome. CONCLUSIONS: The current study presents novel findings regarding the use of irlncRNA without the need to predict precise expression levels in the prognosis of breast cancer patients and to indicate their suitability for anti‐tumor immunotherapy. John Wiley and Sons Inc. 2021-08-11 /pmc/articles/PMC8446415/ /pubmed/34378851 http://dx.doi.org/10.1002/cam4.4189 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Shen, Shuang
Chen, Xin
Hu, Xiaochi
Huo, Jinlong
Luo, Libo
Zhou, Xuezhi
Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
title Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
title_full Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
title_fullStr Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
title_full_unstemmed Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
title_short Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
title_sort predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncrna
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446415/
https://www.ncbi.nlm.nih.gov/pubmed/34378851
http://dx.doi.org/10.1002/cam4.4189
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