Cargando…

Decoding the Structural Dynamics and Conformational Alternations of DNA Secondary Structures by Single-Molecule FRET Microspectroscopy

In addition to the canonical double helix form, DNA is known to be extrapolated into several other secondary structural patterns involving themselves in inter- and intramolecular type hydrogen bonding. The secondary structures of nucleic acids go through several stages of multiple, complex, and inte...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bandyopadhyay, Debolina, Mishra, Padmaja P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Molecular Biosciences
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446445/ https://www.ncbi.nlm.nih.gov/pubmed/34540899 http://dx.doi.org/10.3389/fmolb.2021.725541

Ejemplares similares

Single-Molecule FRET: A Tool to Characterize DNA Nanostructures
por: Pal, Nibedita
Publicado: (2022)

Conformational Dynamics of DNA Polymerases Revealed at the Single-Molecule Level
por: Millar, David P.
Publicado: (2022)

Molecular Brightness Approach for FRET Analysis of Donor-Linker-Acceptor Constructs at the Single Molecule Level: A Concept
por: Kay, Taryn M., et al.
Publicado: (2021)

Structural Analysis and Conformational Dynamics of STN1 Gene Mutations Involved in Coat Plus Syndrome
por: Amir, Mohd., et al.
Publicado: (2019)

NeuralDock: Rapid and Conformation-Agnostic Docking of Small Molecules
por: Sha, Congzhou M., et al.
Publicado: (2022)

Structural characterization and conformational dynamics of alpha-1 antitrypsin pathogenic variants causing alpha-1-antitrypsin deficiency
por: Shaik, Noor Ahmad, et al.
Publicado: (2022)

How round is a protein? Exploring protein structures for globularity using conformal mapping
por: Hass, Joel, et al.
Publicado: (2014)

Structural Perspectives on Extracellular Recognition and Conformational Changes of Several Type-I Transmembrane Receptors
por: Chataigner, Lucas M. P., et al.
Publicado: (2020)

Variable and Conserved Regions of Secondary Structure in the β-Trefoil Fold: Structure Versus Function
por: Blaber, Michael
Publicado: (2022)

Phosphorylation Induced Conformational Transitions in DNA Polymerase β
por: Srivastava, Amit, et al.
Publicado: (2022)

Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data
por: Devaurs, Didier, et al.
Publicado: (2017)

DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations
por: Meli, Massimiliano, et al.
Publicado: (2016)

Understanding protein diffusion on force-induced stretched DNA conformation
por: Mondal, Anupam, et al.
Publicado: (2022)

Secondary Nucleation and the Conservation of Structural Characteristics of Amyloid Fibril Strains
por: Hadi Alijanvand, Saeid, et al.
Publicado: (2021)

Decoding Partner Specificity of Opioid Receptor Family
por: Barreto, Carlos A. V., et al.
Publicado: (2021)

Structural Analysis and Conformational Dynamics of Short Helical Hyperphosphorylated Segments of Tau Protein (Sequence 254–290) in Alzheimer’s Disease: A Molecular Dynamics Simulation Study
por: Alipour, Mozhgan, et al.
Publicado: (2022)

Decoding Cancer Variants of Unknown Significance for Helicase–Nuclease–RPA Complexes Orchestrating DNA Repair During Transcription and Replication
por: Tsutakawa, Susan E., et al.
Publicado: (2021)

Single Molecule Study of the Polymerization of RecA on dsDNA: The Dynamics of Individual Domains
por: Maman, Nitzan, et al.
Publicado: (2021)

Optimization of a small molecule inhibitor of secondary nucleation in α-synuclein aggregation
por: Staats, Roxine, et al.
Publicado: (2023)

Conformational selection and induced fit for RNA polymerase and RNA/DNA hybrid backtracked recognition
por: Wu, Jian, et al.
Publicado: (2015)

Conjugative Coupling Proteins and the Role of Their Domains in Conjugation, Secondary Structure and in vivo Subcellular Location
por: Álvarez-Rodríguez, Itxaso, et al.
Publicado: (2020)

Electron Transfer Coupled to Conformational Dynamics in Cell Respiration
por: Reidelbach, Marco, et al.
Publicado: (2021)

Challenges in describing the conformation and dynamics of proteins with ambiguous behavior
por: Roca-Martinez, Joel, et al.
Publicado: (2022)

Cataract-Causing S93R Mutant Destabilized Structural Conformation of βB1 Crystallin Linking With Aggregates Formation and Cellular Viability
por: Ren, Ling, et al.
Publicado: (2022)

Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA
por: Robb, Nicole C., et al.
Publicado: (2016)

Searching for DNA Damage: Insights From Single Molecule Analysis
por: Schaich, Matthew A., et al.
Publicado: (2021)

Editorial: Recent breakthroughs in the decoding of circulating nucleic acids and their applications to human diseases
por: El-Daly, Sherien M., et al.
Publicado: (2023)

Using the structural diversity of RNA: protein interfaces to selectively target RNA with small molecules in cells: methods and perspectives
por: Li, Aixiao, et al.
Publicado: (2023)

Alternating exosomes and their mimetics as an emergent strategy for targeted cancer therapy
por: Mishra, Lokesh Chandra, et al.
Publicado: (2022)

Single-Molecule Microscopy Meets Molecular Dynamics Simulations for Characterizing the Molecular Action of Proteins on DNA and in Liquid Condensates
por: Kamagata, Kiyoto
Publicado: (2021)

The use of ion mobility mass spectrometry to probe modulation of the structure of p53 and of MDM2 by small molecule inhibitors
por: Dickinson, Eleanor R., et al.
Publicado: (2015)

Characterizing Hydropathy of Amino Acid Side Chain in a Protein Environment by Investigating the Structural Changes of Water Molecules Network
por: Di Rienzo, Lorenzo, et al.
Publicado: (2021)

Decoding Neuromuscular Disorders Using Phenotypic Clusters Obtained From Co-Occurrence Networks
por: Díaz-Santiago, Elena, et al.
Publicado: (2021)

Decoding the Role of Epigenetics in Breast Cancer Using Formal Modeling and Machine-Learning Methods
por: Asim, Ayesha, et al.
Publicado: (2022)

The Role of Conformational Dynamics and Allostery in the Control of Distinct Efficacies of Agonists to the Glucocorticoid Receptor
por: Shi, Yuxin, et al.
Publicado: (2022)

Inactivation of the lysine binding sites of human plasminogen (hPg) reveals novel structural requirements for the tight hPg conformation, M-protein binding, and rapid activation
por: Ayinuola, Yetunde A., et al.
Publicado: (2023)

Structure of New Binary and Ternary DNA Polymerase Complexes From Bacteriophage RB69
por: Park, Jongseo, et al.
Publicado: (2021)

Differences in conformational dynamics within the Hsp90 chaperone family reveal mechanistic insights
por: Graf, Christian, et al.
Publicado: (2014)

Kanamycin-Mediated Conformational Dynamics of Escherichia coli Outer Membrane Protein TolC
por: Pattanayak, Biraja S., et al.
Publicado: (2021)

Editorial: Structural and Dynamic Aspects of Protein Function and Allostery
por: Lisi, George P., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_b3athqarouaf47pplvop0ll28t