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A Life Cycle for Modeling Biology at Different Scales

Modeling has become a popular tool for inquiry and discovery across biological disciplines. Models allow biologists to probe complex questions and to guide experimentation. Modeling literacy among biologists, however, has not always kept pace with the rise in popularity of these techniques and the r...

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Autores principales: Harline, Kate, Martínez-Gómez, Jesús, Specht, Chelsea D., Roeder, Adrienne H. K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446664/
https://www.ncbi.nlm.nih.gov/pubmed/34539702
http://dx.doi.org/10.3389/fpls.2021.710590
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author Harline, Kate
Martínez-Gómez, Jesús
Specht, Chelsea D.
Roeder, Adrienne H. K.
author_facet Harline, Kate
Martínez-Gómez, Jesús
Specht, Chelsea D.
Roeder, Adrienne H. K.
author_sort Harline, Kate
collection PubMed
description Modeling has become a popular tool for inquiry and discovery across biological disciplines. Models allow biologists to probe complex questions and to guide experimentation. Modeling literacy among biologists, however, has not always kept pace with the rise in popularity of these techniques and the relevant advances in modeling theory. The result is a lack of understanding that inhibits communication and ultimately, progress in data gathering and analysis. In an effort to help bridge this gap, we present a blueprint that will empower biologists to interrogate and apply models in their field. We demonstrate the applicability of this blueprint in two case studies from distinct subdisciplines of biology; developmental-biomechanics and evolutionary biology. The models used in these fields vary from summarizing dynamical mechanisms to making statistical inferences, demonstrating the breadth of the utility of models to explore biological phenomena.
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spelling pubmed-84466642021-09-18 A Life Cycle for Modeling Biology at Different Scales Harline, Kate Martínez-Gómez, Jesús Specht, Chelsea D. Roeder, Adrienne H. K. Front Plant Sci Plant Science Modeling has become a popular tool for inquiry and discovery across biological disciplines. Models allow biologists to probe complex questions and to guide experimentation. Modeling literacy among biologists, however, has not always kept pace with the rise in popularity of these techniques and the relevant advances in modeling theory. The result is a lack of understanding that inhibits communication and ultimately, progress in data gathering and analysis. In an effort to help bridge this gap, we present a blueprint that will empower biologists to interrogate and apply models in their field. We demonstrate the applicability of this blueprint in two case studies from distinct subdisciplines of biology; developmental-biomechanics and evolutionary biology. The models used in these fields vary from summarizing dynamical mechanisms to making statistical inferences, demonstrating the breadth of the utility of models to explore biological phenomena. Frontiers Media S.A. 2021-09-03 /pmc/articles/PMC8446664/ /pubmed/34539702 http://dx.doi.org/10.3389/fpls.2021.710590 Text en Copyright © 2021 Harline, Martínez-Gómez, Specht and Roeder. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Harline, Kate
Martínez-Gómez, Jesús
Specht, Chelsea D.
Roeder, Adrienne H. K.
A Life Cycle for Modeling Biology at Different Scales
title A Life Cycle for Modeling Biology at Different Scales
title_full A Life Cycle for Modeling Biology at Different Scales
title_fullStr A Life Cycle for Modeling Biology at Different Scales
title_full_unstemmed A Life Cycle for Modeling Biology at Different Scales
title_short A Life Cycle for Modeling Biology at Different Scales
title_sort life cycle for modeling biology at different scales
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446664/
https://www.ncbi.nlm.nih.gov/pubmed/34539702
http://dx.doi.org/10.3389/fpls.2021.710590
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