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Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13

To discover more efficient degradation processes of lignocellulosic biomass, it is still important to analyze genomic and enzymatic data from bacteria that have strong xylanolytic ability. Here, we present the draft genome sequences of the xylanolytic bacteria Paenibacillus cisolokensis strain LC2-1...

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Autores principales: Uke, Ayaka, Chhe, Chinda, Baramee, Sirilak, Tachaapaikoon, Chakrit, Pason, Patthra, Waeonukul, Rattiya, Ratanakhanokchai, Khanok, Kosugi, Akihiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446789/
https://www.ncbi.nlm.nih.gov/pubmed/34557574
http://dx.doi.org/10.1016/j.dib.2021.107361
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author Uke, Ayaka
Chhe, Chinda
Baramee, Sirilak
Tachaapaikoon, Chakrit
Pason, Patthra
Waeonukul, Rattiya
Ratanakhanokchai, Khanok
Kosugi, Akihiko
author_facet Uke, Ayaka
Chhe, Chinda
Baramee, Sirilak
Tachaapaikoon, Chakrit
Pason, Patthra
Waeonukul, Rattiya
Ratanakhanokchai, Khanok
Kosugi, Akihiko
author_sort Uke, Ayaka
collection PubMed
description To discover more efficient degradation processes of lignocellulosic biomass, it is still important to analyze genomic and enzymatic data from bacteria that have strong xylanolytic ability. Here, we present the draft genome sequences of the xylanolytic bacteria Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13 that are closest to Paenibacillus sp. strain DA-C8, which has strong xylan degradation ability under anaerobic growth conditions. Whole-genome sequencing on the Ion GeneStudio S5 System yielded 277 contigs with total size 5,305,208 bp and G+C content 52.3 mol% for strain LC2-13A and 115 contigs with total size 4,652,266 bp and G+C content of 56.2 mol% for strain K-13. The LC2-13A genome had 5,744 protein-coding sequences (CDSs), 57 tRNAs, and 4 clustered regularly interspaced short palindromic repeats (CRISPRs), and the K-13 genome had 4,388 CDSs, 1 rRNA gene, 45 tRNAs, and 5 CRISPRs. The CDSs of LC2-13A and K-13 encoded the following carbohydrate-active enzymes: 98 and 67 glycoside hydrolases, 31 and 29 glycosyl transferases, 23 and 17 carbohydrate esterases, and 13 and 37 carbohydrate-binding modules, respectively. The whole-genome sequences of LC2-13A and K-13 have been deposited in DDBJ/ENA/GenBank under accession numbers BOVK00000000 and BOVJ00000000. The versions described in this paper are version 1.
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spelling pubmed-84467892021-09-22 Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13 Uke, Ayaka Chhe, Chinda Baramee, Sirilak Tachaapaikoon, Chakrit Pason, Patthra Waeonukul, Rattiya Ratanakhanokchai, Khanok Kosugi, Akihiko Data Brief Data Article To discover more efficient degradation processes of lignocellulosic biomass, it is still important to analyze genomic and enzymatic data from bacteria that have strong xylanolytic ability. Here, we present the draft genome sequences of the xylanolytic bacteria Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13 that are closest to Paenibacillus sp. strain DA-C8, which has strong xylan degradation ability under anaerobic growth conditions. Whole-genome sequencing on the Ion GeneStudio S5 System yielded 277 contigs with total size 5,305,208 bp and G+C content 52.3 mol% for strain LC2-13A and 115 contigs with total size 4,652,266 bp and G+C content of 56.2 mol% for strain K-13. The LC2-13A genome had 5,744 protein-coding sequences (CDSs), 57 tRNAs, and 4 clustered regularly interspaced short palindromic repeats (CRISPRs), and the K-13 genome had 4,388 CDSs, 1 rRNA gene, 45 tRNAs, and 5 CRISPRs. The CDSs of LC2-13A and K-13 encoded the following carbohydrate-active enzymes: 98 and 67 glycoside hydrolases, 31 and 29 glycosyl transferases, 23 and 17 carbohydrate esterases, and 13 and 37 carbohydrate-binding modules, respectively. The whole-genome sequences of LC2-13A and K-13 have been deposited in DDBJ/ENA/GenBank under accession numbers BOVK00000000 and BOVJ00000000. The versions described in this paper are version 1. Elsevier 2021-09-08 /pmc/articles/PMC8446789/ /pubmed/34557574 http://dx.doi.org/10.1016/j.dib.2021.107361 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Uke, Ayaka
Chhe, Chinda
Baramee, Sirilak
Tachaapaikoon, Chakrit
Pason, Patthra
Waeonukul, Rattiya
Ratanakhanokchai, Khanok
Kosugi, Akihiko
Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13
title Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13
title_full Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13
title_fullStr Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13
title_full_unstemmed Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13
title_short Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13
title_sort draft genome sequence data of paenibacillus cisolokensis strain lc2-13a and xylanibacillus composti strain k-13
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8446789/
https://www.ncbi.nlm.nih.gov/pubmed/34557574
http://dx.doi.org/10.1016/j.dib.2021.107361
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