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Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data
Digital rock is an emerging area of rock physics, which involves scanning reservoir rocks using X-ray micro computed tomography (XCT) scanners and using it for various petrophysical computations and evaluations. The acquired micro CT projections are used to reconstruct the X-ray attenuation maps of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8448866/ https://www.ncbi.nlm.nih.gov/pubmed/34535710 http://dx.doi.org/10.1038/s41598-021-97833-z |
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author | Prakash, Jaya Agarwal, Umang Yalavarthy, Phaneendra K. |
author_facet | Prakash, Jaya Agarwal, Umang Yalavarthy, Phaneendra K. |
author_sort | Prakash, Jaya |
collection | PubMed |
description | Digital rock is an emerging area of rock physics, which involves scanning reservoir rocks using X-ray micro computed tomography (XCT) scanners and using it for various petrophysical computations and evaluations. The acquired micro CT projections are used to reconstruct the X-ray attenuation maps of the rock. The image reconstruction problem can be solved by utilization of analytical (such as Feldkamp–Davis–Kress (FDK) algorithm) or iterative methods. Analytical schemes are typically computationally more efficient and hence preferred for large datasets such as digital rocks. Iterative schemes like maximum likelihood expectation maximization (MLEM) are known to generate accurate image representation over analytical scheme in limited data (and/or noisy) situations, however iterative schemes are computationally expensive. In this work, we have parallelized the forward and inverse operators used in the MLEM algorithm on multiple graphics processing units (multi-GPU) platforms. The multi-GPU implementation involves dividing the rock volumes and detector geometry into smaller modules (along with overlap regions). Each of the module was passed onto different GPU to enable computation of forward and inverse operations. We observed an acceleration of [Formula: see text] times using our multi-GPU approach compared to the multi-core CPU implementation. Further multi-GPU based MLEM obtained superior reconstruction compared to traditional FDK algorithm. |
format | Online Article Text |
id | pubmed-8448866 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84488662021-09-21 Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data Prakash, Jaya Agarwal, Umang Yalavarthy, Phaneendra K. Sci Rep Article Digital rock is an emerging area of rock physics, which involves scanning reservoir rocks using X-ray micro computed tomography (XCT) scanners and using it for various petrophysical computations and evaluations. The acquired micro CT projections are used to reconstruct the X-ray attenuation maps of the rock. The image reconstruction problem can be solved by utilization of analytical (such as Feldkamp–Davis–Kress (FDK) algorithm) or iterative methods. Analytical schemes are typically computationally more efficient and hence preferred for large datasets such as digital rocks. Iterative schemes like maximum likelihood expectation maximization (MLEM) are known to generate accurate image representation over analytical scheme in limited data (and/or noisy) situations, however iterative schemes are computationally expensive. In this work, we have parallelized the forward and inverse operators used in the MLEM algorithm on multiple graphics processing units (multi-GPU) platforms. The multi-GPU implementation involves dividing the rock volumes and detector geometry into smaller modules (along with overlap regions). Each of the module was passed onto different GPU to enable computation of forward and inverse operations. We observed an acceleration of [Formula: see text] times using our multi-GPU approach compared to the multi-core CPU implementation. Further multi-GPU based MLEM obtained superior reconstruction compared to traditional FDK algorithm. Nature Publishing Group UK 2021-09-17 /pmc/articles/PMC8448866/ /pubmed/34535710 http://dx.doi.org/10.1038/s41598-021-97833-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Prakash, Jaya Agarwal, Umang Yalavarthy, Phaneendra K. Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
title | Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
title_full | Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
title_fullStr | Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
title_full_unstemmed | Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
title_short | Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
title_sort | multi gpu parallelization of maximum likelihood expectation maximization method for digital rock tomography data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8448866/ https://www.ncbi.nlm.nih.gov/pubmed/34535710 http://dx.doi.org/10.1038/s41598-021-97833-z |
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