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A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity

Associations between inherited Killer Immunoglobulin-like Receptor (KIR) genotypes and the severity of multiple RNA virus infections have been reported. This prospective study was initiated to investigate if such an association exists for COVID-19. In this cohort study performed at Ankara University...

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Autores principales: Beksac, Meral, Akin, Hasan Yalim, Gencer-Oncul, Emine Begum, Yousefzadeh, Mahsa, Cengiz Seval, Guldane, Gulten, Ezgi, Akdemir Kalkan, Irem, Cinar, Gule, Memikoglu, Osman, Karaagaoglu, Ergun, Dalva, Klara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8449213/
https://www.ncbi.nlm.nih.gov/pubmed/34536086
http://dx.doi.org/10.1007/s00251-021-01227-4
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author Beksac, Meral
Akin, Hasan Yalim
Gencer-Oncul, Emine Begum
Yousefzadeh, Mahsa
Cengiz Seval, Guldane
Gulten, Ezgi
Akdemir Kalkan, Irem
Cinar, Gule
Memikoglu, Osman
Karaagaoglu, Ergun
Dalva, Klara
author_facet Beksac, Meral
Akin, Hasan Yalim
Gencer-Oncul, Emine Begum
Yousefzadeh, Mahsa
Cengiz Seval, Guldane
Gulten, Ezgi
Akdemir Kalkan, Irem
Cinar, Gule
Memikoglu, Osman
Karaagaoglu, Ergun
Dalva, Klara
author_sort Beksac, Meral
collection PubMed
description Associations between inherited Killer Immunoglobulin-like Receptor (KIR) genotypes and the severity of multiple RNA virus infections have been reported. This prospective study was initiated to investigate if such an association exists for COVID-19. In this cohort study performed at Ankara University, 132 COVID-19 patients (56 asymptomatic, 51 mild-intermediate, and 25 patients with severe disease) were genotyped for KIR and ligands. Ankara University Donor Registry (n:449) KIR data was used for comparison. Clinical parameters (age, gender, comorbidities, blood group antigens, inflammation biomarkers) and KIR genotypes across cohorts of asymptomatic, mild-intermediate, or severe disease were compared to construct a risk prediction model based on multivariate binary logistic regression analysis with backward elimination method. Age, blood group, number of comorbidities, CRP, D-dimer, and telomeric and centromeric KIR genotypes (tAA, tAB1, and cAB1) along with their cognate ligands were found to differ between cohorts. Two prediction models were constructed; both included age, number of comorbidities, and blood group. Inclusion of the KIR genotypes in the second prediction model exp (-3.52 + 1.56 age group - 2.74 blood group (type A vs others) + 1.26 number of comorbidities - 2.46 tAB1 with ligand + 3.17 tAA with ligand) increased the predictive performance with a 92.9% correct classification for asymptomatic and 76% for severe cases (AUC: 0.93; P < 0.0001, 95% CI 0.88, 0.99). This novel risk model, consisting of KIR genotypes with their cognate ligands, and clinical parameters but excluding earlier published inflammation-related biomarkers allow for the prediction of the severity of COVID-19 infection prior to the onset of infection. This study is listed in the National COVID-19 clinical research studies database. GRAPHICAL ABSTRACT: [Image: see text]
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spelling pubmed-84492132021-09-20 A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity Beksac, Meral Akin, Hasan Yalim Gencer-Oncul, Emine Begum Yousefzadeh, Mahsa Cengiz Seval, Guldane Gulten, Ezgi Akdemir Kalkan, Irem Cinar, Gule Memikoglu, Osman Karaagaoglu, Ergun Dalva, Klara Immunogenetics Original Article Associations between inherited Killer Immunoglobulin-like Receptor (KIR) genotypes and the severity of multiple RNA virus infections have been reported. This prospective study was initiated to investigate if such an association exists for COVID-19. In this cohort study performed at Ankara University, 132 COVID-19 patients (56 asymptomatic, 51 mild-intermediate, and 25 patients with severe disease) were genotyped for KIR and ligands. Ankara University Donor Registry (n:449) KIR data was used for comparison. Clinical parameters (age, gender, comorbidities, blood group antigens, inflammation biomarkers) and KIR genotypes across cohorts of asymptomatic, mild-intermediate, or severe disease were compared to construct a risk prediction model based on multivariate binary logistic regression analysis with backward elimination method. Age, blood group, number of comorbidities, CRP, D-dimer, and telomeric and centromeric KIR genotypes (tAA, tAB1, and cAB1) along with their cognate ligands were found to differ between cohorts. Two prediction models were constructed; both included age, number of comorbidities, and blood group. Inclusion of the KIR genotypes in the second prediction model exp (-3.52 + 1.56 age group - 2.74 blood group (type A vs others) + 1.26 number of comorbidities - 2.46 tAB1 with ligand + 3.17 tAA with ligand) increased the predictive performance with a 92.9% correct classification for asymptomatic and 76% for severe cases (AUC: 0.93; P < 0.0001, 95% CI 0.88, 0.99). This novel risk model, consisting of KIR genotypes with their cognate ligands, and clinical parameters but excluding earlier published inflammation-related biomarkers allow for the prediction of the severity of COVID-19 infection prior to the onset of infection. This study is listed in the National COVID-19 clinical research studies database. GRAPHICAL ABSTRACT: [Image: see text] Springer Berlin Heidelberg 2021-09-18 2021 /pmc/articles/PMC8449213/ /pubmed/34536086 http://dx.doi.org/10.1007/s00251-021-01227-4 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Beksac, Meral
Akin, Hasan Yalim
Gencer-Oncul, Emine Begum
Yousefzadeh, Mahsa
Cengiz Seval, Guldane
Gulten, Ezgi
Akdemir Kalkan, Irem
Cinar, Gule
Memikoglu, Osman
Karaagaoglu, Ergun
Dalva, Klara
A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity
title A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity
title_full A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity
title_fullStr A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity
title_full_unstemmed A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity
title_short A model integrating Killer Immunoglobulin-like Receptor (KIR) haplotypes for risk prediction of COVID-19 clinical disease severity
title_sort model integrating killer immunoglobulin-like receptor (kir) haplotypes for risk prediction of covid-19 clinical disease severity
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8449213/
https://www.ncbi.nlm.nih.gov/pubmed/34536086
http://dx.doi.org/10.1007/s00251-021-01227-4
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