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Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma
It is known that molecular changes in apoptotic genes due to mutation may cause disruption of apoptotic pathway resulting in an abrupt increase in cell proliferation. Therefore, it is of interest to identify compounds that could potentially replenish the changes in the apoptotic pathway, resulted fr...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450155/ https://www.ncbi.nlm.nih.gov/pubmed/34602774 http://dx.doi.org/10.6026/97320630017470 |
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author | Das, Subrata Talukdar, Anupam Das Nath, Rajat Nath, Deepa Rahaman, Ashikur Bhattacharjee, Shamee Choudhury, Manbendra Dutta |
author_facet | Das, Subrata Talukdar, Anupam Das Nath, Rajat Nath, Deepa Rahaman, Ashikur Bhattacharjee, Shamee Choudhury, Manbendra Dutta |
author_sort | Das, Subrata |
collection | PubMed |
description | It is known that molecular changes in apoptotic genes due to mutation may cause disruption of apoptotic pathway resulting in an abrupt increase in cell proliferation. Therefore, it is of interest to identify compounds that could potentially replenish the changes in the apoptotic pathway, resulted from mutation. The gene network analysis using the Network Analyzer Plugin of Cytoscape (3.5.1) shows CFLAR and TRAF2 as influential genes in the apoptotic pathway. Mutation in these genes brings loss in apoptotic property of a cell and thus increases the cell proliferating activity. Thus, data on the molecular docking analysis of four natural compounds from Ottelia alismoides (L.) Pers with the two target proteins were reported. Flupenthixol and desmethylastemizole was found to be two efficient ligand molecules based on ligand-target interaction. In stereochemical quality assessment, the Ramachandran plot analysis of receptors indicates the better stereochemical characteristics for receptor-ligand interaction. |
format | Online Article Text |
id | pubmed-8450155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-84501552021-10-01 Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma Das, Subrata Talukdar, Anupam Das Nath, Rajat Nath, Deepa Rahaman, Ashikur Bhattacharjee, Shamee Choudhury, Manbendra Dutta Bioinformation Research Article It is known that molecular changes in apoptotic genes due to mutation may cause disruption of apoptotic pathway resulting in an abrupt increase in cell proliferation. Therefore, it is of interest to identify compounds that could potentially replenish the changes in the apoptotic pathway, resulted from mutation. The gene network analysis using the Network Analyzer Plugin of Cytoscape (3.5.1) shows CFLAR and TRAF2 as influential genes in the apoptotic pathway. Mutation in these genes brings loss in apoptotic property of a cell and thus increases the cell proliferating activity. Thus, data on the molecular docking analysis of four natural compounds from Ottelia alismoides (L.) Pers with the two target proteins were reported. Flupenthixol and desmethylastemizole was found to be two efficient ligand molecules based on ligand-target interaction. In stereochemical quality assessment, the Ramachandran plot analysis of receptors indicates the better stereochemical characteristics for receptor-ligand interaction. Biomedical Informatics 2021-04-30 /pmc/articles/PMC8450155/ /pubmed/34602774 http://dx.doi.org/10.6026/97320630017470 Text en © 2021 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Das, Subrata Talukdar, Anupam Das Nath, Rajat Nath, Deepa Rahaman, Ashikur Bhattacharjee, Shamee Choudhury, Manbendra Dutta Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma |
title | Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma |
title_full | Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma |
title_fullStr | Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma |
title_full_unstemmed | Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma |
title_short | Molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins CFLAR and TRAF2 linked to lung carcinoma |
title_sort | molecular docking analysis of flupenthixol and desmethylastemizole with the apoptotic regulator proteins cflar and traf2 linked to lung carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450155/ https://www.ncbi.nlm.nih.gov/pubmed/34602774 http://dx.doi.org/10.6026/97320630017470 |
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