Protocol for using MULTILAYER to reveal molecular tissue substructures from digitized spatial transcriptomes

Spatially resolved transcriptomics (SrT) allow researchers to explore organ/tissue architecture from the angle of the gene programs involved in their molecular complexity. Here, we describe the use of MULTILAYER to reveal molecular tissue substructures from the analysis of localized transcriptomes (...

Descripción completa

Detalles Bibliográficos
Autores principales: Moehlin, Julien, Koshy, Aysis, Stüder, François, Mendoza-Parra, Marco Antonio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Protocol
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450297/
https://www.ncbi.nlm.nih.gov/pubmed/34585159
http://dx.doi.org/10.1016/j.xpro.2021.100823
Descripción
Sumario:Spatially resolved transcriptomics (SrT) allow researchers to explore organ/tissue architecture from the angle of the gene programs involved in their molecular complexity. Here, we describe the use of MULTILAYER to reveal molecular tissue substructures from the analysis of localized transcriptomes (defined as gexels). MULTILAYER can process low- and high-resolution SrT data but also perform comparative analyses within multiple SrT readouts. For complete details on the use and execution of this protocol, please refer to Moehlin et al., 2021.

Ejemplares similares