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A binary search scheme for determining all contaminated specimens

Specimens are collected from N different sources. Each specimen has probability p of being contaminated (in the case of a disease, e.g., p is the prevalence rate), independently of the other specimens. Suppose we can apply group testing, namely take small portions from several specimens, mix them to...

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Autor principal: Papanicolaou, Vassilis G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450752/
https://www.ncbi.nlm.nih.gov/pubmed/34542723
http://dx.doi.org/10.1007/s00285-021-01663-6
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author Papanicolaou, Vassilis G.
author_facet Papanicolaou, Vassilis G.
author_sort Papanicolaou, Vassilis G.
collection PubMed
description Specimens are collected from N different sources. Each specimen has probability p of being contaminated (in the case of a disease, e.g., p is the prevalence rate), independently of the other specimens. Suppose we can apply group testing, namely take small portions from several specimens, mix them together, and test the mixture for contamination, so that if the test turns positive, then at least one of the samples in the mixture is contaminated. In this paper we give a detailed probabilistic analysis of a binary search scheme, we propose, for determining all contaminated specimens. More precisely, we study the number T(N) of tests required in order to find all the contaminated specimens, if this search scheme is applied. We derive recursive and, in some cases, explicit formulas for the expectation, the variance, and the characteristic function of T(N). Also, we determine the asymptotic behavior of the moments of T(N) as [Formula: see text] and from that we obtain the limiting distribution of T(N) (appropriately normalized), which turns out to be normal.
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spelling pubmed-84507522021-09-20 A binary search scheme for determining all contaminated specimens Papanicolaou, Vassilis G. J Math Biol Article Specimens are collected from N different sources. Each specimen has probability p of being contaminated (in the case of a disease, e.g., p is the prevalence rate), independently of the other specimens. Suppose we can apply group testing, namely take small portions from several specimens, mix them together, and test the mixture for contamination, so that if the test turns positive, then at least one of the samples in the mixture is contaminated. In this paper we give a detailed probabilistic analysis of a binary search scheme, we propose, for determining all contaminated specimens. More precisely, we study the number T(N) of tests required in order to find all the contaminated specimens, if this search scheme is applied. We derive recursive and, in some cases, explicit formulas for the expectation, the variance, and the characteristic function of T(N). Also, we determine the asymptotic behavior of the moments of T(N) as [Formula: see text] and from that we obtain the limiting distribution of T(N) (appropriately normalized), which turns out to be normal. Springer Berlin Heidelberg 2021-09-20 2021 /pmc/articles/PMC8450752/ /pubmed/34542723 http://dx.doi.org/10.1007/s00285-021-01663-6 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Papanicolaou, Vassilis G.
A binary search scheme for determining all contaminated specimens
title A binary search scheme for determining all contaminated specimens
title_full A binary search scheme for determining all contaminated specimens
title_fullStr A binary search scheme for determining all contaminated specimens
title_full_unstemmed A binary search scheme for determining all contaminated specimens
title_short A binary search scheme for determining all contaminated specimens
title_sort binary search scheme for determining all contaminated specimens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450752/
https://www.ncbi.nlm.nih.gov/pubmed/34542723
http://dx.doi.org/10.1007/s00285-021-01663-6
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