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High Water Density at Non-Ice-Binding Surfaces Contributes to the Hyperactivity of Antifreeze Proteins
[Image: see text] Antifreeze proteins (AFPs) can bind to ice nuclei thereby inhibiting their growth and their hydration shell is believed to play a fundamental role. Here, we use molecular dynamics simulations to characterize the hydration shell of four moderately-active and four hyperactive AFPs. T...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450935/ https://www.ncbi.nlm.nih.gov/pubmed/34491750 http://dx.doi.org/10.1021/acs.jpclett.1c01855 |
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author | Biswas, Akash Deep Barone, Vincenzo Daidone, Isabella |
author_facet | Biswas, Akash Deep Barone, Vincenzo Daidone, Isabella |
author_sort | Biswas, Akash Deep |
collection | PubMed |
description | [Image: see text] Antifreeze proteins (AFPs) can bind to ice nuclei thereby inhibiting their growth and their hydration shell is believed to play a fundamental role. Here, we use molecular dynamics simulations to characterize the hydration shell of four moderately-active and four hyperactive AFPs. The local water density around the ice-binding-surface (IBS) is found to be lower than that around the non-ice-binding surface (NIBS) and this difference correlates with the higher hydrophobicity of the former. While the water-density increase (with respect to bulk) around the IBS is similar between moderately-active and hyperactive AFPs, it differs around the NIBS, being higher for the hyperactive AFPs. We hypothesize that while the lower water density at the IBS can pave the way to protein binding to ice nuclei, irrespective of the antifreeze activity, the higher density at the NIBS of the hyperactive AFPs contribute to their enhanced ability in inhibiting ice growth around the bound AFPs. |
format | Online Article Text |
id | pubmed-8450935 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-84509352021-09-21 High Water Density at Non-Ice-Binding Surfaces Contributes to the Hyperactivity of Antifreeze Proteins Biswas, Akash Deep Barone, Vincenzo Daidone, Isabella J Phys Chem Lett [Image: see text] Antifreeze proteins (AFPs) can bind to ice nuclei thereby inhibiting their growth and their hydration shell is believed to play a fundamental role. Here, we use molecular dynamics simulations to characterize the hydration shell of four moderately-active and four hyperactive AFPs. The local water density around the ice-binding-surface (IBS) is found to be lower than that around the non-ice-binding surface (NIBS) and this difference correlates with the higher hydrophobicity of the former. While the water-density increase (with respect to bulk) around the IBS is similar between moderately-active and hyperactive AFPs, it differs around the NIBS, being higher for the hyperactive AFPs. We hypothesize that while the lower water density at the IBS can pave the way to protein binding to ice nuclei, irrespective of the antifreeze activity, the higher density at the NIBS of the hyperactive AFPs contribute to their enhanced ability in inhibiting ice growth around the bound AFPs. American Chemical Society 2021-09-07 2021-09-16 /pmc/articles/PMC8450935/ /pubmed/34491750 http://dx.doi.org/10.1021/acs.jpclett.1c01855 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biswas, Akash Deep Barone, Vincenzo Daidone, Isabella High Water Density at Non-Ice-Binding Surfaces Contributes to the Hyperactivity of Antifreeze Proteins |
title | High Water Density at Non-Ice-Binding Surfaces Contributes
to the Hyperactivity of Antifreeze Proteins |
title_full | High Water Density at Non-Ice-Binding Surfaces Contributes
to the Hyperactivity of Antifreeze Proteins |
title_fullStr | High Water Density at Non-Ice-Binding Surfaces Contributes
to the Hyperactivity of Antifreeze Proteins |
title_full_unstemmed | High Water Density at Non-Ice-Binding Surfaces Contributes
to the Hyperactivity of Antifreeze Proteins |
title_short | High Water Density at Non-Ice-Binding Surfaces Contributes
to the Hyperactivity of Antifreeze Proteins |
title_sort | high water density at non-ice-binding surfaces contributes
to the hyperactivity of antifreeze proteins |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8450935/ https://www.ncbi.nlm.nih.gov/pubmed/34491750 http://dx.doi.org/10.1021/acs.jpclett.1c01855 |
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