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Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images

We trained a deep learning algorithm to use skin optical coherence tomography (OCT) angiograms to differentiate between healthy and type 2 diabetic mice. OCT angiograms were acquired with a custom‐built OCT system based on an akinetic swept laser at 1322 nm with a lateral resolution of ∼13 μm and us...

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Autores principales: Pfister, Martin, Stegmann, Hannes, Schützenberger, Kornelia, Schäfer, Bhavapriya Jasmin, Hohenadl, Christine, Schmetterer, Leopold, Gröschl, Martin, Werkmeister, René M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8451751/
https://www.ncbi.nlm.nih.gov/pubmed/33638189
http://dx.doi.org/10.1111/nyas.14582
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author Pfister, Martin
Stegmann, Hannes
Schützenberger, Kornelia
Schäfer, Bhavapriya Jasmin
Hohenadl, Christine
Schmetterer, Leopold
Gröschl, Martin
Werkmeister, René M.
author_facet Pfister, Martin
Stegmann, Hannes
Schützenberger, Kornelia
Schäfer, Bhavapriya Jasmin
Hohenadl, Christine
Schmetterer, Leopold
Gröschl, Martin
Werkmeister, René M.
author_sort Pfister, Martin
collection PubMed
description We trained a deep learning algorithm to use skin optical coherence tomography (OCT) angiograms to differentiate between healthy and type 2 diabetic mice. OCT angiograms were acquired with a custom‐built OCT system based on an akinetic swept laser at 1322 nm with a lateral resolution of ∼13 μm and using split‐spectrum amplitude decorrelation. Our data set consisted of 24 stitched angiograms of the full ear, with a size of approximately 8.2 × 8.2 mm, evenly distributed between healthy and diabetic mice. The deep learning classification algorithm uses the ResNet v2 convolutional neural network architecture and was trained on small patches extracted from the full ear angiograms. For individual patches, we obtained a cross‐validated accuracy of 0.925 and an area under the receiver operating characteristic curve (ROC AUC) of 0.974. Averaging over multiple patches extracted from each ear resulted in the correct classification of all 24 ears.
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spelling pubmed-84517512021-09-27 Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images Pfister, Martin Stegmann, Hannes Schützenberger, Kornelia Schäfer, Bhavapriya Jasmin Hohenadl, Christine Schmetterer, Leopold Gröschl, Martin Werkmeister, René M. Ann N Y Acad Sci Original Articles We trained a deep learning algorithm to use skin optical coherence tomography (OCT) angiograms to differentiate between healthy and type 2 diabetic mice. OCT angiograms were acquired with a custom‐built OCT system based on an akinetic swept laser at 1322 nm with a lateral resolution of ∼13 μm and using split‐spectrum amplitude decorrelation. Our data set consisted of 24 stitched angiograms of the full ear, with a size of approximately 8.2 × 8.2 mm, evenly distributed between healthy and diabetic mice. The deep learning classification algorithm uses the ResNet v2 convolutional neural network architecture and was trained on small patches extracted from the full ear angiograms. For individual patches, we obtained a cross‐validated accuracy of 0.925 and an area under the receiver operating characteristic curve (ROC AUC) of 0.974. Averaging over multiple patches extracted from each ear resulted in the correct classification of all 24 ears. John Wiley and Sons Inc. 2021-02-26 2021-08 /pmc/articles/PMC8451751/ /pubmed/33638189 http://dx.doi.org/10.1111/nyas.14582 Text en © 2021 The Authors. Annals of the New York Academy of Sciences published by Wiley Periodicals LLC on behalf of New York Academy of Sciences https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Pfister, Martin
Stegmann, Hannes
Schützenberger, Kornelia
Schäfer, Bhavapriya Jasmin
Hohenadl, Christine
Schmetterer, Leopold
Gröschl, Martin
Werkmeister, René M.
Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
title Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
title_full Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
title_fullStr Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
title_full_unstemmed Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
title_short Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
title_sort deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8451751/
https://www.ncbi.nlm.nih.gov/pubmed/33638189
http://dx.doi.org/10.1111/nyas.14582
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