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Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images
We trained a deep learning algorithm to use skin optical coherence tomography (OCT) angiograms to differentiate between healthy and type 2 diabetic mice. OCT angiograms were acquired with a custom‐built OCT system based on an akinetic swept laser at 1322 nm with a lateral resolution of ∼13 μm and us...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8451751/ https://www.ncbi.nlm.nih.gov/pubmed/33638189 http://dx.doi.org/10.1111/nyas.14582 |
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author | Pfister, Martin Stegmann, Hannes Schützenberger, Kornelia Schäfer, Bhavapriya Jasmin Hohenadl, Christine Schmetterer, Leopold Gröschl, Martin Werkmeister, René M. |
author_facet | Pfister, Martin Stegmann, Hannes Schützenberger, Kornelia Schäfer, Bhavapriya Jasmin Hohenadl, Christine Schmetterer, Leopold Gröschl, Martin Werkmeister, René M. |
author_sort | Pfister, Martin |
collection | PubMed |
description | We trained a deep learning algorithm to use skin optical coherence tomography (OCT) angiograms to differentiate between healthy and type 2 diabetic mice. OCT angiograms were acquired with a custom‐built OCT system based on an akinetic swept laser at 1322 nm with a lateral resolution of ∼13 μm and using split‐spectrum amplitude decorrelation. Our data set consisted of 24 stitched angiograms of the full ear, with a size of approximately 8.2 × 8.2 mm, evenly distributed between healthy and diabetic mice. The deep learning classification algorithm uses the ResNet v2 convolutional neural network architecture and was trained on small patches extracted from the full ear angiograms. For individual patches, we obtained a cross‐validated accuracy of 0.925 and an area under the receiver operating characteristic curve (ROC AUC) of 0.974. Averaging over multiple patches extracted from each ear resulted in the correct classification of all 24 ears. |
format | Online Article Text |
id | pubmed-8451751 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84517512021-09-27 Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images Pfister, Martin Stegmann, Hannes Schützenberger, Kornelia Schäfer, Bhavapriya Jasmin Hohenadl, Christine Schmetterer, Leopold Gröschl, Martin Werkmeister, René M. Ann N Y Acad Sci Original Articles We trained a deep learning algorithm to use skin optical coherence tomography (OCT) angiograms to differentiate between healthy and type 2 diabetic mice. OCT angiograms were acquired with a custom‐built OCT system based on an akinetic swept laser at 1322 nm with a lateral resolution of ∼13 μm and using split‐spectrum amplitude decorrelation. Our data set consisted of 24 stitched angiograms of the full ear, with a size of approximately 8.2 × 8.2 mm, evenly distributed between healthy and diabetic mice. The deep learning classification algorithm uses the ResNet v2 convolutional neural network architecture and was trained on small patches extracted from the full ear angiograms. For individual patches, we obtained a cross‐validated accuracy of 0.925 and an area under the receiver operating characteristic curve (ROC AUC) of 0.974. Averaging over multiple patches extracted from each ear resulted in the correct classification of all 24 ears. John Wiley and Sons Inc. 2021-02-26 2021-08 /pmc/articles/PMC8451751/ /pubmed/33638189 http://dx.doi.org/10.1111/nyas.14582 Text en © 2021 The Authors. Annals of the New York Academy of Sciences published by Wiley Periodicals LLC on behalf of New York Academy of Sciences https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Pfister, Martin Stegmann, Hannes Schützenberger, Kornelia Schäfer, Bhavapriya Jasmin Hohenadl, Christine Schmetterer, Leopold Gröschl, Martin Werkmeister, René M. Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
title | Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
title_full | Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
title_fullStr | Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
title_full_unstemmed | Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
title_short | Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
title_sort | deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8451751/ https://www.ncbi.nlm.nih.gov/pubmed/33638189 http://dx.doi.org/10.1111/nyas.14582 |
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