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Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior

Retrospective analyses of interventions to epidemics, in which the effectiveness of strategies implemented are compared to hypothetical alternatives, are valuable for performing the cost–benefit calculations necessary to optimize infection countermeasures. SIR (susceptible–infected–removed) models a...

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Autores principales: Osborn, Jenna, Berman, Shayna, Bender-Bier, Sara, D’Souza, Gavin, Myers, Matthew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8451982/
https://www.ncbi.nlm.nih.gov/pubmed/34547363
http://dx.doi.org/10.1016/j.mbs.2021.108712
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author Osborn, Jenna
Berman, Shayna
Bender-Bier, Sara
D’Souza, Gavin
Myers, Matthew
author_facet Osborn, Jenna
Berman, Shayna
Bender-Bier, Sara
D’Souza, Gavin
Myers, Matthew
author_sort Osborn, Jenna
collection PubMed
description Retrospective analyses of interventions to epidemics, in which the effectiveness of strategies implemented are compared to hypothetical alternatives, are valuable for performing the cost–benefit calculations necessary to optimize infection countermeasures. SIR (susceptible–infected–removed) models are useful in this regard but are limited by the challenge of deciding how and when to update the numerous parameters as the epidemic changes in response to population behaviors. Behaviors of particular interest include facemask adoption (at various levels) and social distancing. We present a method that uses a “dynamic spread function” to systematically capture the continuous variation in the population behavior and the gradual change in infection evolution, resulting from interventions. No parameter updates are made by the user. We use the tool to quantify the reduction in infection rate realizable from the population of New York City adopting different facemask strategies during COVID-19. Assuming a baseline facemask of 67% filtration efficiency, calculations show that increasing the efficiency to 80% could have reduced the roughly 5000 new infections per day occurring at the peak of the epidemic to around 4000. Population behavior that may not be varied as part of the retrospective analysis, such as social distancing in a facemask analysis, are automatically captured as part of the calibration of the dynamic spread function.
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spelling pubmed-84519822021-09-21 Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior Osborn, Jenna Berman, Shayna Bender-Bier, Sara D’Souza, Gavin Myers, Matthew Math Biosci Original Research Article Retrospective analyses of interventions to epidemics, in which the effectiveness of strategies implemented are compared to hypothetical alternatives, are valuable for performing the cost–benefit calculations necessary to optimize infection countermeasures. SIR (susceptible–infected–removed) models are useful in this regard but are limited by the challenge of deciding how and when to update the numerous parameters as the epidemic changes in response to population behaviors. Behaviors of particular interest include facemask adoption (at various levels) and social distancing. We present a method that uses a “dynamic spread function” to systematically capture the continuous variation in the population behavior and the gradual change in infection evolution, resulting from interventions. No parameter updates are made by the user. We use the tool to quantify the reduction in infection rate realizable from the population of New York City adopting different facemask strategies during COVID-19. Assuming a baseline facemask of 67% filtration efficiency, calculations show that increasing the efficiency to 80% could have reduced the roughly 5000 new infections per day occurring at the peak of the epidemic to around 4000. Population behavior that may not be varied as part of the retrospective analysis, such as social distancing in a facemask analysis, are automatically captured as part of the calibration of the dynamic spread function. American Elsevier 2021-11 2021-09-20 /pmc/articles/PMC8451982/ /pubmed/34547363 http://dx.doi.org/10.1016/j.mbs.2021.108712 Text en Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original Research Article
Osborn, Jenna
Berman, Shayna
Bender-Bier, Sara
D’Souza, Gavin
Myers, Matthew
Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
title Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
title_full Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
title_fullStr Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
title_full_unstemmed Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
title_short Retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
title_sort retrospective analysis of interventions to epidemics using dynamic simulation of population behavior
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8451982/
https://www.ncbi.nlm.nih.gov/pubmed/34547363
http://dx.doi.org/10.1016/j.mbs.2021.108712
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