Cargando…
PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids
PorphyStruct, a new digital tool for the analysis of non‐planar distortion modes of different porphyrinoids, and its application to corrole structures is reported. The program makes use of the normal‐coordinate structure decomposition technique (NSD) and employs sets of normal modes equivalent to th...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8453524/ https://www.ncbi.nlm.nih.gov/pubmed/34061410 http://dx.doi.org/10.1002/chem.202101243 |
_version_ | 1784570291551207424 |
---|---|
author | Krumsieck, Jens Bröring, Martin |
author_facet | Krumsieck, Jens Bröring, Martin |
author_sort | Krumsieck, Jens |
collection | PubMed |
description | PorphyStruct, a new digital tool for the analysis of non‐planar distortion modes of different porphyrinoids, and its application to corrole structures is reported. The program makes use of the normal‐coordinate structure decomposition technique (NSD) and employs sets of normal modes equivalent to those established for porphyrins in order to describe the out‐of‐plane dislocation pattern of perimeter atoms from corroles, norcorroles, porphycenes and other porphyrinoids quantitatively and in analogy to the established terminology. A comparative study of 17 porphyrin structures shows very similar results to the original NSD analysis and no systematic error. Application to corroles is successful and reveals the necessity to implement an extended basis of normal modes for a large share of experimental structures. The results frequently show the concomitant occurence of several modes but remain interpretable. For group XI metal corroles the phenomenon of supersaddling was unravelled, allowing for more in‐depths discussions of structure‐function correlations. |
format | Online Article Text |
id | pubmed-8453524 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84535242021-09-27 PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids Krumsieck, Jens Bröring, Martin Chemistry Full Papers PorphyStruct, a new digital tool for the analysis of non‐planar distortion modes of different porphyrinoids, and its application to corrole structures is reported. The program makes use of the normal‐coordinate structure decomposition technique (NSD) and employs sets of normal modes equivalent to those established for porphyrins in order to describe the out‐of‐plane dislocation pattern of perimeter atoms from corroles, norcorroles, porphycenes and other porphyrinoids quantitatively and in analogy to the established terminology. A comparative study of 17 porphyrin structures shows very similar results to the original NSD analysis and no systematic error. Application to corroles is successful and reveals the necessity to implement an extended basis of normal modes for a large share of experimental structures. The results frequently show the concomitant occurence of several modes but remain interpretable. For group XI metal corroles the phenomenon of supersaddling was unravelled, allowing for more in‐depths discussions of structure‐function correlations. John Wiley and Sons Inc. 2021-06-24 2021-08-11 /pmc/articles/PMC8453524/ /pubmed/34061410 http://dx.doi.org/10.1002/chem.202101243 Text en © 2021 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Full Papers Krumsieck, Jens Bröring, Martin PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids |
title | PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids |
title_full | PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids |
title_fullStr | PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids |
title_full_unstemmed | PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids |
title_short | PorphyStruct: A Digital Tool for the Quantitative Assignment of Non‐Planar Distortion Modes in Four‐Membered Porphyrinoids |
title_sort | porphystruct: a digital tool for the quantitative assignment of non‐planar distortion modes in four‐membered porphyrinoids |
topic | Full Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8453524/ https://www.ncbi.nlm.nih.gov/pubmed/34061410 http://dx.doi.org/10.1002/chem.202101243 |
work_keys_str_mv | AT krumsieckjens porphystructadigitaltoolforthequantitativeassignmentofnonplanardistortionmodesinfourmemberedporphyrinoids AT broringmartin porphystructadigitaltoolforthequantitativeassignmentofnonplanardistortionmodesinfourmemberedporphyrinoids |