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An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease
BACKGROUND: Ring finger protein 213 (RNF213) is a susceptibility gene of moyamoya disease (MMD). A previous case–control study and a family analysis demonstrated a strong association of the East Asian‐specific variant, R4810K (rs112735431), with MMD. Our aim is to uncover evolutionary history of R48...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8453937/ https://www.ncbi.nlm.nih.gov/pubmed/34013582 http://dx.doi.org/10.1111/ahg.12424 |
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author | Koganebuchi, Kae Sato, Kimitoshi Fujii, Kiyotaka Kumabe, Toshihiro Haneji, Kuniaki Toma, Takashi Ishida, Hajime Joh, Keiichiro Soejima, Hidenobu Mano, Shuhei Ogawa, Motoyuki Oota, Hiroki |
author_facet | Koganebuchi, Kae Sato, Kimitoshi Fujii, Kiyotaka Kumabe, Toshihiro Haneji, Kuniaki Toma, Takashi Ishida, Hajime Joh, Keiichiro Soejima, Hidenobu Mano, Shuhei Ogawa, Motoyuki Oota, Hiroki |
author_sort | Koganebuchi, Kae |
collection | PubMed |
description | BACKGROUND: Ring finger protein 213 (RNF213) is a susceptibility gene of moyamoya disease (MMD). A previous case–control study and a family analysis demonstrated a strong association of the East Asian‐specific variant, R4810K (rs112735431), with MMD. Our aim is to uncover evolutionary history of R4810K in East Asian populations. METHODS: The RNF213 locus of 24 MMD patients in Japan were sequenced using targeted‐capture sequencing. Based on the sequence data, we conducted population genetic analysis and estimated the age of R4810K using coalescent simulation. RESULTS: The diversity of the RNF213 gene was higher in Africans than non‐Africans, which can be explained by bottleneck effect of the out‐of‐Africa migration. Coalescent simulation showed that the risk variant was born in East Asia 14,500–5100 years ago and came to the Japanese archipelago afterward, probably in the period when the known migration based on archaeological evidences occurred. CONCLUSIONS: Although clinical data show that the symptoms varies, all sequences harboring the risk allele are almost identical with a small number of exceptions, suggesting the MMD phenotypes are unaffected by the variants of this gene and rather would be more affected by environmental factors. |
format | Online Article Text |
id | pubmed-8453937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84539372021-09-27 An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease Koganebuchi, Kae Sato, Kimitoshi Fujii, Kiyotaka Kumabe, Toshihiro Haneji, Kuniaki Toma, Takashi Ishida, Hajime Joh, Keiichiro Soejima, Hidenobu Mano, Shuhei Ogawa, Motoyuki Oota, Hiroki Ann Hum Genet Original Articles BACKGROUND: Ring finger protein 213 (RNF213) is a susceptibility gene of moyamoya disease (MMD). A previous case–control study and a family analysis demonstrated a strong association of the East Asian‐specific variant, R4810K (rs112735431), with MMD. Our aim is to uncover evolutionary history of R4810K in East Asian populations. METHODS: The RNF213 locus of 24 MMD patients in Japan were sequenced using targeted‐capture sequencing. Based on the sequence data, we conducted population genetic analysis and estimated the age of R4810K using coalescent simulation. RESULTS: The diversity of the RNF213 gene was higher in Africans than non‐Africans, which can be explained by bottleneck effect of the out‐of‐Africa migration. Coalescent simulation showed that the risk variant was born in East Asia 14,500–5100 years ago and came to the Japanese archipelago afterward, probably in the period when the known migration based on archaeological evidences occurred. CONCLUSIONS: Although clinical data show that the symptoms varies, all sequences harboring the risk allele are almost identical with a small number of exceptions, suggesting the MMD phenotypes are unaffected by the variants of this gene and rather would be more affected by environmental factors. John Wiley and Sons Inc. 2021-05-20 2021-09 /pmc/articles/PMC8453937/ /pubmed/34013582 http://dx.doi.org/10.1111/ahg.12424 Text en © 2021 The Authors. Annals of Human Genetics published by University College London (UCL) and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Koganebuchi, Kae Sato, Kimitoshi Fujii, Kiyotaka Kumabe, Toshihiro Haneji, Kuniaki Toma, Takashi Ishida, Hajime Joh, Keiichiro Soejima, Hidenobu Mano, Shuhei Ogawa, Motoyuki Oota, Hiroki An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease |
title | An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease |
title_full | An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease |
title_fullStr | An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease |
title_full_unstemmed | An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease |
title_short | An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease |
title_sort | analysis of the demographic history of the risk allele r4810k in rnf213 of moyamoya disease |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8453937/ https://www.ncbi.nlm.nih.gov/pubmed/34013582 http://dx.doi.org/10.1111/ahg.12424 |
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