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Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii

Caprolactamase is the first enzyme in the caprolactam degradation pathway of Pseudomonas jessenii. It is composed of two subunits (CapA and CapB) and sequence‐related to other ATP‐dependent enzymes involved in lactam hydrolysis, like 5‐oxoprolinases and hydantoinases. Low sequence similarity also ex...

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Autores principales: Marjanovic, Antonija, Rozeboom, Henriëtte J., de Vries, Meintje S., Mayer, Clemens, Otzen, Marleen, Wijma, Hein J., Janssen, Dick B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8453981/
https://www.ncbi.nlm.nih.gov/pubmed/33826169
http://dx.doi.org/10.1002/prot.26082
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author Marjanovic, Antonija
Rozeboom, Henriëtte J.
de Vries, Meintje S.
Mayer, Clemens
Otzen, Marleen
Wijma, Hein J.
Janssen, Dick B.
author_facet Marjanovic, Antonija
Rozeboom, Henriëtte J.
de Vries, Meintje S.
Mayer, Clemens
Otzen, Marleen
Wijma, Hein J.
Janssen, Dick B.
author_sort Marjanovic, Antonija
collection PubMed
description Caprolactamase is the first enzyme in the caprolactam degradation pathway of Pseudomonas jessenii. It is composed of two subunits (CapA and CapB) and sequence‐related to other ATP‐dependent enzymes involved in lactam hydrolysis, like 5‐oxoprolinases and hydantoinases. Low sequence similarity also exists with ATP‐dependent acetone‐ and acetophenone carboxylases. The caprolactamase was produced in Escherichia coli, isolated by His‐tag affinity chromatography, and subjected to functional and structural studies. Activity toward caprolactam required ATP and was dependent on the presence of bicarbonate in the assay buffer. The hydrolysis product was identified as 6‐aminocaproic acid. Quantum mechanical modeling indicated that the hydrolysis of caprolactam was highly disfavored (ΔG(0)'= 23 kJ/mol), which explained the ATP dependence. A crystal structure showed that the enzyme exists as an (αβ)(2) tetramer and revealed an ATP‐binding site in CapA and a Zn‐coordinating site in CapB. Mutations in the ATP‐binding site of CapA (D11A and D295A) significantly reduced product formation. Mutants with substitutions in the metal binding site of CapB (D41A, H99A, D101A, and H124A) were inactive and less thermostable than the wild‐type enzyme. These residues proved to be essential for activity and on basis of the experimental findings we propose possible mechanisms for ATP‐dependent lactam hydrolysis.
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spelling pubmed-84539812021-09-27 Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii Marjanovic, Antonija Rozeboom, Henriëtte J. de Vries, Meintje S. Mayer, Clemens Otzen, Marleen Wijma, Hein J. Janssen, Dick B. Proteins Research Articles Caprolactamase is the first enzyme in the caprolactam degradation pathway of Pseudomonas jessenii. It is composed of two subunits (CapA and CapB) and sequence‐related to other ATP‐dependent enzymes involved in lactam hydrolysis, like 5‐oxoprolinases and hydantoinases. Low sequence similarity also exists with ATP‐dependent acetone‐ and acetophenone carboxylases. The caprolactamase was produced in Escherichia coli, isolated by His‐tag affinity chromatography, and subjected to functional and structural studies. Activity toward caprolactam required ATP and was dependent on the presence of bicarbonate in the assay buffer. The hydrolysis product was identified as 6‐aminocaproic acid. Quantum mechanical modeling indicated that the hydrolysis of caprolactam was highly disfavored (ΔG(0)'= 23 kJ/mol), which explained the ATP dependence. A crystal structure showed that the enzyme exists as an (αβ)(2) tetramer and revealed an ATP‐binding site in CapA and a Zn‐coordinating site in CapB. Mutations in the ATP‐binding site of CapA (D11A and D295A) significantly reduced product formation. Mutants with substitutions in the metal binding site of CapB (D41A, H99A, D101A, and H124A) were inactive and less thermostable than the wild‐type enzyme. These residues proved to be essential for activity and on basis of the experimental findings we propose possible mechanisms for ATP‐dependent lactam hydrolysis. John Wiley & Sons, Inc. 2021-05-06 2021-09 /pmc/articles/PMC8453981/ /pubmed/33826169 http://dx.doi.org/10.1002/prot.26082 Text en © 2021 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Marjanovic, Antonija
Rozeboom, Henriëtte J.
de Vries, Meintje S.
Mayer, Clemens
Otzen, Marleen
Wijma, Hein J.
Janssen, Dick B.
Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii
title Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii
title_full Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii
title_fullStr Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii
title_full_unstemmed Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii
title_short Catalytic and structural properties of ATP‐dependent caprolactamase from Pseudomonas jessenii
title_sort catalytic and structural properties of atp‐dependent caprolactamase from pseudomonas jessenii
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8453981/
https://www.ncbi.nlm.nih.gov/pubmed/33826169
http://dx.doi.org/10.1002/prot.26082
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