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Deep transfer learning based classification model for covid-19 using chest CT-scans

COVID-19 is an infectious and contagious virus. As of this writing, more than 160 million people have been infected since its emergence, including more than 125,000 in Algeria. In this work, We first collected a dataset of 4986 COVID and non-COVID images confirmed by RT-PCR tests at Tlemcen hospital...

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Autores principales: LAHSAINI, Ilyas, EL HABIB DAHO, Mostafa, CHIKH, Mohamed Amine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8455169/
https://www.ncbi.nlm.nih.gov/pubmed/34566222
http://dx.doi.org/10.1016/j.patrec.2021.08.035
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author LAHSAINI, Ilyas
EL HABIB DAHO, Mostafa
CHIKH, Mohamed Amine
author_facet LAHSAINI, Ilyas
EL HABIB DAHO, Mostafa
CHIKH, Mohamed Amine
author_sort LAHSAINI, Ilyas
collection PubMed
description COVID-19 is an infectious and contagious virus. As of this writing, more than 160 million people have been infected since its emergence, including more than 125,000 in Algeria. In this work, We first collected a dataset of 4986 COVID and non-COVID images confirmed by RT-PCR tests at Tlemcen hospital in Algeria. Then we performed a transfer learning on deep learning models that got the best results on the ImageNet dataset, such as DenseNet121, DenseNet201, VGG16, VGG19, Inception Resnet-V2, and Xception, in order to conduct a comparative study. Therefore, We have proposed an explainable model based on the DenseNet201 architecture and the GradCam explanation algorithm to detect COVID-19 in chest CT images and explain the output decision. Experiments have shown promising results and proven that the introduced model can be beneficial for diagnosing and following up patients with COVID-19.
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spelling pubmed-84551692021-09-22 Deep transfer learning based classification model for covid-19 using chest CT-scans LAHSAINI, Ilyas EL HABIB DAHO, Mostafa CHIKH, Mohamed Amine Pattern Recognit Lett Article COVID-19 is an infectious and contagious virus. As of this writing, more than 160 million people have been infected since its emergence, including more than 125,000 in Algeria. In this work, We first collected a dataset of 4986 COVID and non-COVID images confirmed by RT-PCR tests at Tlemcen hospital in Algeria. Then we performed a transfer learning on deep learning models that got the best results on the ImageNet dataset, such as DenseNet121, DenseNet201, VGG16, VGG19, Inception Resnet-V2, and Xception, in order to conduct a comparative study. Therefore, We have proposed an explainable model based on the DenseNet201 architecture and the GradCam explanation algorithm to detect COVID-19 in chest CT images and explain the output decision. Experiments have shown promising results and proven that the introduced model can be beneficial for diagnosing and following up patients with COVID-19. Elsevier B.V. 2021-12 2021-09-22 /pmc/articles/PMC8455169/ /pubmed/34566222 http://dx.doi.org/10.1016/j.patrec.2021.08.035 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
LAHSAINI, Ilyas
EL HABIB DAHO, Mostafa
CHIKH, Mohamed Amine
Deep transfer learning based classification model for covid-19 using chest CT-scans
title Deep transfer learning based classification model for covid-19 using chest CT-scans
title_full Deep transfer learning based classification model for covid-19 using chest CT-scans
title_fullStr Deep transfer learning based classification model for covid-19 using chest CT-scans
title_full_unstemmed Deep transfer learning based classification model for covid-19 using chest CT-scans
title_short Deep transfer learning based classification model for covid-19 using chest CT-scans
title_sort deep transfer learning based classification model for covid-19 using chest ct-scans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8455169/
https://www.ncbi.nlm.nih.gov/pubmed/34566222
http://dx.doi.org/10.1016/j.patrec.2021.08.035
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