Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

BACKGROUND: BES/BZR family genes have vital roles in plant growth, development, and adaptation to environmental stimuli. However, they have not yet been characterized and systematically analyzed in wheat and foxtail millet. RESULTS: In the current study, five common and two unique BES/BZR genes were...

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Autores principales: Liu, Dan, Cui, Yanjiao, Zhao, Zilong, Li, Suying, Liang, Dan, Wang, Conglei, Feng, Gang, Wang, Jianhe, Liu, Zhengli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8456565/
https://www.ncbi.nlm.nih.gov/pubmed/34548036
http://dx.doi.org/10.1186/s12864-021-08002-5
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author Liu, Dan
Cui, Yanjiao
Zhao, Zilong
Li, Suying
Liang, Dan
Wang, Conglei
Feng, Gang
Wang, Jianhe
Liu, Zhengli
author_facet Liu, Dan
Cui, Yanjiao
Zhao, Zilong
Li, Suying
Liang, Dan
Wang, Conglei
Feng, Gang
Wang, Jianhe
Liu, Zhengli
author_sort Liu, Dan
collection PubMed
description BACKGROUND: BES/BZR family genes have vital roles in plant growth, development, and adaptation to environmental stimuli. However, they have not yet been characterized and systematically analyzed in wheat and foxtail millet. RESULTS: In the current study, five common and two unique BES/BZR genes were identified by genome-wide analysis in wheat and foxtail millet, respectively. These genes were unevenly distributed on 14 and five chromosomes of wheat and foxtail millet, respectively, and clustered in two subgroups in a phylogenetic analysis. The BES/BZR gene family members in each subgroup contained similar conserved motifs. Investigation of cis-acting elements and expression profile analysis revealed that the BES/BZR genes were predominantly expressed in leaf tissues of wheat and foxtail millet seedlings and responded to brassinosteroid, abscisic acid, and NaCl treatments. CONCLUSIONS: Our results provide a basis for future studies on the function and molecular mechanisms of the BES/BZR gene family in wheat, foxtail millet, and other plants. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-08002-5.
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spelling pubmed-84565652021-09-22 Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet Liu, Dan Cui, Yanjiao Zhao, Zilong Li, Suying Liang, Dan Wang, Conglei Feng, Gang Wang, Jianhe Liu, Zhengli BMC Genomics Research BACKGROUND: BES/BZR family genes have vital roles in plant growth, development, and adaptation to environmental stimuli. However, they have not yet been characterized and systematically analyzed in wheat and foxtail millet. RESULTS: In the current study, five common and two unique BES/BZR genes were identified by genome-wide analysis in wheat and foxtail millet, respectively. These genes were unevenly distributed on 14 and five chromosomes of wheat and foxtail millet, respectively, and clustered in two subgroups in a phylogenetic analysis. The BES/BZR gene family members in each subgroup contained similar conserved motifs. Investigation of cis-acting elements and expression profile analysis revealed that the BES/BZR genes were predominantly expressed in leaf tissues of wheat and foxtail millet seedlings and responded to brassinosteroid, abscisic acid, and NaCl treatments. CONCLUSIONS: Our results provide a basis for future studies on the function and molecular mechanisms of the BES/BZR gene family in wheat, foxtail millet, and other plants. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-08002-5. BioMed Central 2021-09-21 /pmc/articles/PMC8456565/ /pubmed/34548036 http://dx.doi.org/10.1186/s12864-021-08002-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Liu, Dan
Cui, Yanjiao
Zhao, Zilong
Li, Suying
Liang, Dan
Wang, Conglei
Feng, Gang
Wang, Jianhe
Liu, Zhengli
Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet
title Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet
title_full Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet
title_fullStr Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet
title_full_unstemmed Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet
title_short Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet
title_sort genome-wide identification and characterization of the bes/bzr gene family in wheat and foxtail millet
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8456565/
https://www.ncbi.nlm.nih.gov/pubmed/34548036
http://dx.doi.org/10.1186/s12864-021-08002-5
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