Cargando…

Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives

The controlled oxidation reaction of L‐selenocystine under neutral pH conditions affords selenocysteine seleninic acid (3‐selenino‐L‐alanine) which is characterized also by means of single‐crystal X‐ray diffraction. This technique shows that selenium forms three chalcogen bonds (ChBs), one of them b...

Descripción completa

Detalles Bibliográficos
Autores principales: Tripathi, Abhishek, Daolio, Andrea, Pizzi, Andrea, Guo, Zhifang, Turner, David R., Baggioli, Alberto, Famulari, Antonino, Deacon, Glen B., Resnati, Giuseppe, Singh, Harkesh B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8456948/
https://www.ncbi.nlm.nih.gov/pubmed/34214252
http://dx.doi.org/10.1002/asia.202100545
_version_ 1784570976559693824
author Tripathi, Abhishek
Daolio, Andrea
Pizzi, Andrea
Guo, Zhifang
Turner, David R.
Baggioli, Alberto
Famulari, Antonino
Deacon, Glen B.
Resnati, Giuseppe
Singh, Harkesh B.
author_facet Tripathi, Abhishek
Daolio, Andrea
Pizzi, Andrea
Guo, Zhifang
Turner, David R.
Baggioli, Alberto
Famulari, Antonino
Deacon, Glen B.
Resnati, Giuseppe
Singh, Harkesh B.
author_sort Tripathi, Abhishek
collection PubMed
description The controlled oxidation reaction of L‐selenocystine under neutral pH conditions affords selenocysteine seleninic acid (3‐selenino‐L‐alanine) which is characterized also by means of single‐crystal X‐ray diffraction. This technique shows that selenium forms three chalcogen bonds (ChBs), one of them being outstandingly short. A survey of seleninic acid derivatives in the Cambridge Structural Database (CSD) confirms that the C−Se(=O)O− functionality tends to act as a ChB donor robust enough to systematically influence the interactional landscape in the solid. Quantum Theory of Atom in Molecules (QTAIM) analysis proves the attractive nature of the short contacts observed in crystals containing the seleninic functionality and calculation of surface molecular electrostatic potential (MEP) reveals that remarkably positive σ‐holes can frequently be found opposite to the covalent bonds at selenium. Both CSD searches and QTAIM and MEP approaches show that also the sulfinic acid moiety can function as a ChB donor, albeit less frequently than the seleninic acid one. These findings may contribute to a better understanding, at the atomic level, of the mechanism of action of the enzymes that control oxidative stress and ROS deactivation and that contain selenocysteine seleninic acid and cysteine sulfinic acid in the active site.
format Online
Article
Text
id pubmed-8456948
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-84569482021-09-27 Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives Tripathi, Abhishek Daolio, Andrea Pizzi, Andrea Guo, Zhifang Turner, David R. Baggioli, Alberto Famulari, Antonino Deacon, Glen B. Resnati, Giuseppe Singh, Harkesh B. Chem Asian J Full Papers The controlled oxidation reaction of L‐selenocystine under neutral pH conditions affords selenocysteine seleninic acid (3‐selenino‐L‐alanine) which is characterized also by means of single‐crystal X‐ray diffraction. This technique shows that selenium forms three chalcogen bonds (ChBs), one of them being outstandingly short. A survey of seleninic acid derivatives in the Cambridge Structural Database (CSD) confirms that the C−Se(=O)O− functionality tends to act as a ChB donor robust enough to systematically influence the interactional landscape in the solid. Quantum Theory of Atom in Molecules (QTAIM) analysis proves the attractive nature of the short contacts observed in crystals containing the seleninic functionality and calculation of surface molecular electrostatic potential (MEP) reveals that remarkably positive σ‐holes can frequently be found opposite to the covalent bonds at selenium. Both CSD searches and QTAIM and MEP approaches show that also the sulfinic acid moiety can function as a ChB donor, albeit less frequently than the seleninic acid one. These findings may contribute to a better understanding, at the atomic level, of the mechanism of action of the enzymes that control oxidative stress and ROS deactivation and that contain selenocysteine seleninic acid and cysteine sulfinic acid in the active site. John Wiley and Sons Inc. 2021-07-16 2021-08-16 /pmc/articles/PMC8456948/ /pubmed/34214252 http://dx.doi.org/10.1002/asia.202100545 Text en © 2021 The Authors. Chemistry - An Asian Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Tripathi, Abhishek
Daolio, Andrea
Pizzi, Andrea
Guo, Zhifang
Turner, David R.
Baggioli, Alberto
Famulari, Antonino
Deacon, Glen B.
Resnati, Giuseppe
Singh, Harkesh B.
Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives
title Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives
title_full Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives
title_fullStr Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives
title_full_unstemmed Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives
title_short Chalcogen Bonds in Selenocysteine Seleninic Acid, a Functional GPx Constituent, and in Other Seleninic or Sulfinic Acid Derivatives
title_sort chalcogen bonds in selenocysteine seleninic acid, a functional gpx constituent, and in other seleninic or sulfinic acid derivatives
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8456948/
https://www.ncbi.nlm.nih.gov/pubmed/34214252
http://dx.doi.org/10.1002/asia.202100545
work_keys_str_mv AT tripathiabhishek chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT daolioandrea chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT pizziandrea chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT guozhifang chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT turnerdavidr chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT baggiolialberto chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT famulariantonino chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT deaconglenb chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT resnatigiuseppe chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives
AT singhharkeshb chalcogenbondsinselenocysteineseleninicacidafunctionalgpxconstituentandinotherseleninicorsulfinicacidderivatives