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Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile
BACKGROUND: Alterations in lipid metabolism are increasingly being recognized. However, the application of lipid metabolism in the prognosis of gastric cancer (GC) has not yet been explored. METHODS: A total of 204 lipid metabolism relative genes were analyzed in the GC cohort from The Cancer Genome...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8457048/ https://www.ncbi.nlm.nih.gov/pubmed/34568042 http://dx.doi.org/10.3389/fonc.2021.712746 |
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author | Xiong, Zhen Lin, Yao Yu, Yan Zhou, Xianghui Fan, Jun Rog, Colin J. Cai, Kailin Wang, Zheng Chang, Zhijie Wang, Guobin Tao, Kaixiong Cai, Ming |
author_facet | Xiong, Zhen Lin, Yao Yu, Yan Zhou, Xianghui Fan, Jun Rog, Colin J. Cai, Kailin Wang, Zheng Chang, Zhijie Wang, Guobin Tao, Kaixiong Cai, Ming |
author_sort | Xiong, Zhen |
collection | PubMed |
description | BACKGROUND: Alterations in lipid metabolism are increasingly being recognized. However, the application of lipid metabolism in the prognosis of gastric cancer (GC) has not yet been explored. METHODS: A total of 204 lipid metabolism relative genes were analyzed in the GC cohort from The Cancer Genome Atlas (TCGA), and four independent cohorts from Gene Expression Omnibus (GEO) and one cohort from Wuhan Union Hospital were applied for external validation. Differential expression and enrichment analyses were performed between GC and normal tissue. The LASSO-Cox proportional hazard regression model was applied to select prognostic genes and to construct a gene expression profile. RESULTS: Our research indicated that higher expression level of AKR1B1, PLD1, and UGT8 were correlated with worse prognosis of GC patients, while AGPAT3 was correlated with better prognosis. Furthermore, we developed a gene profile composed of AGPAT3, AKR1B1, PLD1, and UGT8 suggested three groups with a significant difference in overall survival (OS). The profile was successfully validated in an independent cohort and performed well in the immunohistochemical cohort. Furthermore, we found that ether lipid metabolism, glycerophospholipid metabolism, and glycerolipid metabolism were upregulated, and fatty acid β-oxidation and other lipid peroxidation processes were reduced in GC. CONCLUSION: Collectively, we found lipid metabolism is reliable and clinically applicable in predicting the prognosis of GC based on a novel gene profile. |
format | Online Article Text |
id | pubmed-8457048 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84570482021-09-23 Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile Xiong, Zhen Lin, Yao Yu, Yan Zhou, Xianghui Fan, Jun Rog, Colin J. Cai, Kailin Wang, Zheng Chang, Zhijie Wang, Guobin Tao, Kaixiong Cai, Ming Front Oncol Oncology BACKGROUND: Alterations in lipid metabolism are increasingly being recognized. However, the application of lipid metabolism in the prognosis of gastric cancer (GC) has not yet been explored. METHODS: A total of 204 lipid metabolism relative genes were analyzed in the GC cohort from The Cancer Genome Atlas (TCGA), and four independent cohorts from Gene Expression Omnibus (GEO) and one cohort from Wuhan Union Hospital were applied for external validation. Differential expression and enrichment analyses were performed between GC and normal tissue. The LASSO-Cox proportional hazard regression model was applied to select prognostic genes and to construct a gene expression profile. RESULTS: Our research indicated that higher expression level of AKR1B1, PLD1, and UGT8 were correlated with worse prognosis of GC patients, while AGPAT3 was correlated with better prognosis. Furthermore, we developed a gene profile composed of AGPAT3, AKR1B1, PLD1, and UGT8 suggested three groups with a significant difference in overall survival (OS). The profile was successfully validated in an independent cohort and performed well in the immunohistochemical cohort. Furthermore, we found that ether lipid metabolism, glycerophospholipid metabolism, and glycerolipid metabolism were upregulated, and fatty acid β-oxidation and other lipid peroxidation processes were reduced in GC. CONCLUSION: Collectively, we found lipid metabolism is reliable and clinically applicable in predicting the prognosis of GC based on a novel gene profile. Frontiers Media S.A. 2021-09-08 /pmc/articles/PMC8457048/ /pubmed/34568042 http://dx.doi.org/10.3389/fonc.2021.712746 Text en Copyright © 2021 Xiong, Lin, Yu, Zhou, Fan, Rog, Cai, Wang, Chang, Wang, Tao and Cai https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Xiong, Zhen Lin, Yao Yu, Yan Zhou, Xianghui Fan, Jun Rog, Colin J. Cai, Kailin Wang, Zheng Chang, Zhijie Wang, Guobin Tao, Kaixiong Cai, Ming Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile |
title | Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile |
title_full | Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile |
title_fullStr | Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile |
title_full_unstemmed | Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile |
title_short | Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile |
title_sort | exploration of lipid metabolism in gastric cancer: a novel prognostic genes expression profile |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8457048/ https://www.ncbi.nlm.nih.gov/pubmed/34568042 http://dx.doi.org/10.3389/fonc.2021.712746 |
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