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Nanopore sequencing in non-human forensic genetics

The past decade has seen a rapid expansion of non-human forensic genetics coinciding with the development of 2nd and 3rd generation DNA sequencing technologies. Nanopore sequencing is one such technology that offers massively parallel sequencing at a fraction of the capital cost of other sequencing...

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Detalles Bibliográficos
Autores principales: Ogden, Rob, Vasiljevic, Nina, Prost, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8457772/
https://www.ncbi.nlm.nih.gov/pubmed/34002773
http://dx.doi.org/10.1042/ETLS20200287
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author Ogden, Rob
Vasiljevic, Nina
Prost, Stefan
author_facet Ogden, Rob
Vasiljevic, Nina
Prost, Stefan
author_sort Ogden, Rob
collection PubMed
description The past decade has seen a rapid expansion of non-human forensic genetics coinciding with the development of 2nd and 3rd generation DNA sequencing technologies. Nanopore sequencing is one such technology that offers massively parallel sequencing at a fraction of the capital cost of other sequencing platforms. The application of nanopore sequencing to species identification has already been widely demonstrated in biomonitoring studies and has significant potential for non-human forensic casework, particularly in the area of wildlife forensics. This review examines nanopore sequencing technology and assesses its potential applications, advantages and drawbacks for use in non-human forensics, alongside other next-generation sequencing platforms and as a possible replacement to Sanger sequencing. We assess the specific challenges of sequence error rate and the standardisation of consensus sequence production, before discussing recent progress in the validation of nanopore sequencing for use in forensic casework. We conclude that nanopore sequencing may be able to play a considerable role in the future of non-human forensic genetics, especially for applications to wildlife law enforcement within emerging forensic laboratories.
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spelling pubmed-84577722021-10-06 Nanopore sequencing in non-human forensic genetics Ogden, Rob Vasiljevic, Nina Prost, Stefan Emerg Top Life Sci Review Articles The past decade has seen a rapid expansion of non-human forensic genetics coinciding with the development of 2nd and 3rd generation DNA sequencing technologies. Nanopore sequencing is one such technology that offers massively parallel sequencing at a fraction of the capital cost of other sequencing platforms. The application of nanopore sequencing to species identification has already been widely demonstrated in biomonitoring studies and has significant potential for non-human forensic casework, particularly in the area of wildlife forensics. This review examines nanopore sequencing technology and assesses its potential applications, advantages and drawbacks for use in non-human forensics, alongside other next-generation sequencing platforms and as a possible replacement to Sanger sequencing. We assess the specific challenges of sequence error rate and the standardisation of consensus sequence production, before discussing recent progress in the validation of nanopore sequencing for use in forensic casework. We conclude that nanopore sequencing may be able to play a considerable role in the future of non-human forensic genetics, especially for applications to wildlife law enforcement within emerging forensic laboratories. Portland Press Ltd. 2021-09-24 2021-05-18 /pmc/articles/PMC8457772/ /pubmed/34002773 http://dx.doi.org/10.1042/ETLS20200287 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and the Royal Society of Biology and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . Open access for this article was enabled by the participation of University of Edinburgh in an all-inclusive Read & Publish pilot with Portland Press and the Biochemical Society under a transformative agreement with JISC.
spellingShingle Review Articles
Ogden, Rob
Vasiljevic, Nina
Prost, Stefan
Nanopore sequencing in non-human forensic genetics
title Nanopore sequencing in non-human forensic genetics
title_full Nanopore sequencing in non-human forensic genetics
title_fullStr Nanopore sequencing in non-human forensic genetics
title_full_unstemmed Nanopore sequencing in non-human forensic genetics
title_short Nanopore sequencing in non-human forensic genetics
title_sort nanopore sequencing in non-human forensic genetics
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8457772/
https://www.ncbi.nlm.nih.gov/pubmed/34002773
http://dx.doi.org/10.1042/ETLS20200287
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