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Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages
Micro-computed tomography (micro-CT) is a high-resolution 3D-imaging technique which is now increasingly applied in biological studies focusing on taxonomy and functional morphology. The creation of virtual representations of specimens can increase availability of otherwise underexploited and inacce...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458271/ https://www.ncbi.nlm.nih.gov/pubmed/34616212 http://dx.doi.org/10.3897/BDJ.9.e71542 |
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author | Chatzinikolaou, Eva Keklikoglou, Kleoniki |
author_facet | Chatzinikolaou, Eva Keklikoglou, Kleoniki |
author_sort | Chatzinikolaou, Eva |
collection | PubMed |
description | Micro-computed tomography (micro-CT) is a high-resolution 3D-imaging technique which is now increasingly applied in biological studies focusing on taxonomy and functional morphology. The creation of virtual representations of specimens can increase availability of otherwise underexploited and inaccessible samples. The 3D model dataset can be also further processed through volume rendering and morphometric analysis. The success of micro-CT as a visualisation technique depends on several methodological manipulations, including the use of contrast enhancing staining agents, filters, scanning mediums, containers, exposure time and frame averaging. The aim of this study was to standardise a series of micro-CT scanning and 3D analysis protocols for a marine gastropod species, Hexaplextrunculus. The analytical protocols have followed all the developmental stages of this gastropod, from egg capsules and embryos to juveniles and adults. |
format | Online Article Text |
id | pubmed-8458271 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-84582712021-10-05 Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages Chatzinikolaou, Eva Keklikoglou, Kleoniki Biodivers Data J Methods Micro-computed tomography (micro-CT) is a high-resolution 3D-imaging technique which is now increasingly applied in biological studies focusing on taxonomy and functional morphology. The creation of virtual representations of specimens can increase availability of otherwise underexploited and inaccessible samples. The 3D model dataset can be also further processed through volume rendering and morphometric analysis. The success of micro-CT as a visualisation technique depends on several methodological manipulations, including the use of contrast enhancing staining agents, filters, scanning mediums, containers, exposure time and frame averaging. The aim of this study was to standardise a series of micro-CT scanning and 3D analysis protocols for a marine gastropod species, Hexaplextrunculus. The analytical protocols have followed all the developmental stages of this gastropod, from egg capsules and embryos to juveniles and adults. Pensoft Publishers 2021-09-15 /pmc/articles/PMC8458271/ /pubmed/34616212 http://dx.doi.org/10.3897/BDJ.9.e71542 Text en Eva Chatzinikolaou, Kleoniki Keklikoglou https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Methods Chatzinikolaou, Eva Keklikoglou, Kleoniki Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages |
title | Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages |
title_full | Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages |
title_fullStr | Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages |
title_full_unstemmed | Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages |
title_short | Micro-CT protocols for scanning and 3D analysis of Hexaplextrunculus during its different life stages |
title_sort | micro-ct protocols for scanning and 3d analysis of hexaplextrunculus during its different life stages |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458271/ https://www.ncbi.nlm.nih.gov/pubmed/34616212 http://dx.doi.org/10.3897/BDJ.9.e71542 |
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