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Structure and stability of the designer protein WRAP-T and its permutants

[Formula: see text] -Propeller proteins are common natural disc-like pseudo-symmetric proteins that contain multiple repeats (‘blades’) each consisting of a 4-stranded anti-parallel [Formula: see text] -sheet. So far, 4- to 12-bladed [Formula: see text] -propellers have been discovered in nature sho...

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Autores principales: Mylemans, Bram, Lee, Xiao Yin, Laier, Ina, Helsen, Christine, Voet, Arnout R. D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458387/
https://www.ncbi.nlm.nih.gov/pubmed/34552189
http://dx.doi.org/10.1038/s41598-021-98391-0
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author Mylemans, Bram
Lee, Xiao Yin
Laier, Ina
Helsen, Christine
Voet, Arnout R. D.
author_facet Mylemans, Bram
Lee, Xiao Yin
Laier, Ina
Helsen, Christine
Voet, Arnout R. D.
author_sort Mylemans, Bram
collection PubMed
description [Formula: see text] -Propeller proteins are common natural disc-like pseudo-symmetric proteins that contain multiple repeats (‘blades’) each consisting of a 4-stranded anti-parallel [Formula: see text] -sheet. So far, 4- to 12-bladed [Formula: see text] -propellers have been discovered in nature showing large functional and sequential variation. Using computational design approaches, we created perfectly symmetric [Formula: see text] -propellers out of natural pseudo-symmetric templates. These proteins are useful tools to study protein evolution of this very diverse fold. While the 7-bladed architecture is the most common, no symmetric 7-bladed monomer has been created and characterized so far. Here we describe such a engineered protein, based on a highly symmetric natural template, and test the effects of circular permutation on its stability. Geometrical analysis of this protein and other artificial symmetrical proteins reveals no systematic constraint that could be used to help in engineering of this fold, and suggests sequence constraints unique to each [Formula: see text] -propeller sub-family.
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spelling pubmed-84583872021-09-24 Structure and stability of the designer protein WRAP-T and its permutants Mylemans, Bram Lee, Xiao Yin Laier, Ina Helsen, Christine Voet, Arnout R. D. Sci Rep Article [Formula: see text] -Propeller proteins are common natural disc-like pseudo-symmetric proteins that contain multiple repeats (‘blades’) each consisting of a 4-stranded anti-parallel [Formula: see text] -sheet. So far, 4- to 12-bladed [Formula: see text] -propellers have been discovered in nature showing large functional and sequential variation. Using computational design approaches, we created perfectly symmetric [Formula: see text] -propellers out of natural pseudo-symmetric templates. These proteins are useful tools to study protein evolution of this very diverse fold. While the 7-bladed architecture is the most common, no symmetric 7-bladed monomer has been created and characterized so far. Here we describe such a engineered protein, based on a highly symmetric natural template, and test the effects of circular permutation on its stability. Geometrical analysis of this protein and other artificial symmetrical proteins reveals no systematic constraint that could be used to help in engineering of this fold, and suggests sequence constraints unique to each [Formula: see text] -propeller sub-family. Nature Publishing Group UK 2021-09-22 /pmc/articles/PMC8458387/ /pubmed/34552189 http://dx.doi.org/10.1038/s41598-021-98391-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Mylemans, Bram
Lee, Xiao Yin
Laier, Ina
Helsen, Christine
Voet, Arnout R. D.
Structure and stability of the designer protein WRAP-T and its permutants
title Structure and stability of the designer protein WRAP-T and its permutants
title_full Structure and stability of the designer protein WRAP-T and its permutants
title_fullStr Structure and stability of the designer protein WRAP-T and its permutants
title_full_unstemmed Structure and stability of the designer protein WRAP-T and its permutants
title_short Structure and stability of the designer protein WRAP-T and its permutants
title_sort structure and stability of the designer protein wrap-t and its permutants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458387/
https://www.ncbi.nlm.nih.gov/pubmed/34552189
http://dx.doi.org/10.1038/s41598-021-98391-0
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