Cargando…
A scalable workflow to characterize the human exposome
Complementing the genome with an understanding of the human exposome is an important challenge for contemporary science and technology. Tens of thousands of chemicals are used in commerce, yet cost for targeted environmental chemical analysis limits surveillance to a few hundred known hazards. To ov...
Autores principales: | , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458492/ https://www.ncbi.nlm.nih.gov/pubmed/34552080 http://dx.doi.org/10.1038/s41467-021-25840-9 |
_version_ | 1784571313751326720 |
---|---|
author | Hu, Xin Walker, Douglas I. Liang, Yongliang Smith, Matthew Ryan Orr, Michael L. Juran, Brian D. Ma, Chunyu Uppal, Karan Koval, Michael Martin, Greg S. Neujahr, David C. Marsit, Carmen J. Go, Young-Mi Pennell, Kurt D. Miller, Gary W. Lazaridis, Konstantinos N. Jones, Dean P. |
author_facet | Hu, Xin Walker, Douglas I. Liang, Yongliang Smith, Matthew Ryan Orr, Michael L. Juran, Brian D. Ma, Chunyu Uppal, Karan Koval, Michael Martin, Greg S. Neujahr, David C. Marsit, Carmen J. Go, Young-Mi Pennell, Kurt D. Miller, Gary W. Lazaridis, Konstantinos N. Jones, Dean P. |
author_sort | Hu, Xin |
collection | PubMed |
description | Complementing the genome with an understanding of the human exposome is an important challenge for contemporary science and technology. Tens of thousands of chemicals are used in commerce, yet cost for targeted environmental chemical analysis limits surveillance to a few hundred known hazards. To overcome limitations which prevent scaling to thousands of chemicals, we develop a single-step express liquid extraction and gas chromatography high-resolution mass spectrometry analysis to operationalize the human exposome. We show that the workflow supports quantification of environmental chemicals in human plasma (200 µL) and tissue (≤100 mg) samples. The method also provides high resolution, sensitivity and selectivity for exposome epidemiology of mass spectral features without a priori knowledge of chemical identity. The simplicity of the method can facilitate harmonization of environmental biomonitoring between laboratories and enable population level human exposome research with limited sample volume. |
format | Online Article Text |
id | pubmed-8458492 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84584922021-10-07 A scalable workflow to characterize the human exposome Hu, Xin Walker, Douglas I. Liang, Yongliang Smith, Matthew Ryan Orr, Michael L. Juran, Brian D. Ma, Chunyu Uppal, Karan Koval, Michael Martin, Greg S. Neujahr, David C. Marsit, Carmen J. Go, Young-Mi Pennell, Kurt D. Miller, Gary W. Lazaridis, Konstantinos N. Jones, Dean P. Nat Commun Article Complementing the genome with an understanding of the human exposome is an important challenge for contemporary science and technology. Tens of thousands of chemicals are used in commerce, yet cost for targeted environmental chemical analysis limits surveillance to a few hundred known hazards. To overcome limitations which prevent scaling to thousands of chemicals, we develop a single-step express liquid extraction and gas chromatography high-resolution mass spectrometry analysis to operationalize the human exposome. We show that the workflow supports quantification of environmental chemicals in human plasma (200 µL) and tissue (≤100 mg) samples. The method also provides high resolution, sensitivity and selectivity for exposome epidemiology of mass spectral features without a priori knowledge of chemical identity. The simplicity of the method can facilitate harmonization of environmental biomonitoring between laboratories and enable population level human exposome research with limited sample volume. Nature Publishing Group UK 2021-09-22 /pmc/articles/PMC8458492/ /pubmed/34552080 http://dx.doi.org/10.1038/s41467-021-25840-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Hu, Xin Walker, Douglas I. Liang, Yongliang Smith, Matthew Ryan Orr, Michael L. Juran, Brian D. Ma, Chunyu Uppal, Karan Koval, Michael Martin, Greg S. Neujahr, David C. Marsit, Carmen J. Go, Young-Mi Pennell, Kurt D. Miller, Gary W. Lazaridis, Konstantinos N. Jones, Dean P. A scalable workflow to characterize the human exposome |
title | A scalable workflow to characterize the human exposome |
title_full | A scalable workflow to characterize the human exposome |
title_fullStr | A scalable workflow to characterize the human exposome |
title_full_unstemmed | A scalable workflow to characterize the human exposome |
title_short | A scalable workflow to characterize the human exposome |
title_sort | scalable workflow to characterize the human exposome |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458492/ https://www.ncbi.nlm.nih.gov/pubmed/34552080 http://dx.doi.org/10.1038/s41467-021-25840-9 |
work_keys_str_mv | AT huxin ascalableworkflowtocharacterizethehumanexposome AT walkerdouglasi ascalableworkflowtocharacterizethehumanexposome AT liangyongliang ascalableworkflowtocharacterizethehumanexposome AT smithmatthewryan ascalableworkflowtocharacterizethehumanexposome AT orrmichaell ascalableworkflowtocharacterizethehumanexposome AT juranbriand ascalableworkflowtocharacterizethehumanexposome AT machunyu ascalableworkflowtocharacterizethehumanexposome AT uppalkaran ascalableworkflowtocharacterizethehumanexposome AT kovalmichael ascalableworkflowtocharacterizethehumanexposome AT martingregs ascalableworkflowtocharacterizethehumanexposome AT neujahrdavidc ascalableworkflowtocharacterizethehumanexposome AT marsitcarmenj ascalableworkflowtocharacterizethehumanexposome AT goyoungmi ascalableworkflowtocharacterizethehumanexposome AT pennellkurtd ascalableworkflowtocharacterizethehumanexposome AT millergaryw ascalableworkflowtocharacterizethehumanexposome AT lazaridiskonstantinosn ascalableworkflowtocharacterizethehumanexposome AT jonesdeanp ascalableworkflowtocharacterizethehumanexposome AT huxin scalableworkflowtocharacterizethehumanexposome AT walkerdouglasi scalableworkflowtocharacterizethehumanexposome AT liangyongliang scalableworkflowtocharacterizethehumanexposome AT smithmatthewryan scalableworkflowtocharacterizethehumanexposome AT orrmichaell scalableworkflowtocharacterizethehumanexposome AT juranbriand scalableworkflowtocharacterizethehumanexposome AT machunyu scalableworkflowtocharacterizethehumanexposome AT uppalkaran scalableworkflowtocharacterizethehumanexposome AT kovalmichael scalableworkflowtocharacterizethehumanexposome AT martingregs scalableworkflowtocharacterizethehumanexposome AT neujahrdavidc scalableworkflowtocharacterizethehumanexposome AT marsitcarmenj scalableworkflowtocharacterizethehumanexposome AT goyoungmi scalableworkflowtocharacterizethehumanexposome AT pennellkurtd scalableworkflowtocharacterizethehumanexposome AT millergaryw scalableworkflowtocharacterizethehumanexposome AT lazaridiskonstantinosn scalableworkflowtocharacterizethehumanexposome AT jonesdeanp scalableworkflowtocharacterizethehumanexposome |