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Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images

Coronavirus Disease 2019 (COVID-19) pandemic has been ferociously destroying global health and economics. According to World Health Organisation (WHO), until May 2021, more than one hundred million infected cases and 3.2 million deaths have been reported in over 200 countries. Unfortunately, the num...

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Autores principales: Nguyen, Hai Thanh, Bao Tran, Toan, Luong, Huong Hoang, Nguyen Huynh, Tuan Khoi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8459784/
https://www.ncbi.nlm.nih.gov/pubmed/34616895
http://dx.doi.org/10.7717/peerj-cs.719
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author Nguyen, Hai Thanh
Bao Tran, Toan
Luong, Huong Hoang
Nguyen Huynh, Tuan Khoi
author_facet Nguyen, Hai Thanh
Bao Tran, Toan
Luong, Huong Hoang
Nguyen Huynh, Tuan Khoi
author_sort Nguyen, Hai Thanh
collection PubMed
description Coronavirus Disease 2019 (COVID-19) pandemic has been ferociously destroying global health and economics. According to World Health Organisation (WHO), until May 2021, more than one hundred million infected cases and 3.2 million deaths have been reported in over 200 countries. Unfortunately, the numbers are still on the rise. Therefore, scientists are making a significant effort in researching accurate, efficient diagnoses. Several studies advocating artificial intelligence proposed COVID diagnosis methods on lung images with high accuracy. Furthermore, some affected areas in the lung images can be detected accurately by segmentation methods. This work has considered state-of-the-art Convolutional Neural Network architectures, combined with the Unet family and Feature Pyramid Network (FPN) for COVID segmentation tasks on Computed Tomography (CT) scanner samples from the Italian Society of Medical and Interventional Radiology dataset. The experiments show that the decoder-based Unet family has reached the best (a mean Intersection Over Union (mIoU) of 0.9234, 0.9032 in dice score, and a recall of 0.9349) with a combination between SE ResNeXt and Unet++. The decoder with the Unet family obtained better COVID segmentation performance in comparison with Feature Pyramid Network. Furthermore, the proposed method outperforms recent segmentation state-of-the-art approaches such as the SegNet-based network, ADID-UNET, and A-SegNet + FTL. Therefore, it is expected to provide good segmentation visualizations of medical images.
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spelling pubmed-84597842021-10-05 Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images Nguyen, Hai Thanh Bao Tran, Toan Luong, Huong Hoang Nguyen Huynh, Tuan Khoi PeerJ Comput Sci Bioinformatics Coronavirus Disease 2019 (COVID-19) pandemic has been ferociously destroying global health and economics. According to World Health Organisation (WHO), until May 2021, more than one hundred million infected cases and 3.2 million deaths have been reported in over 200 countries. Unfortunately, the numbers are still on the rise. Therefore, scientists are making a significant effort in researching accurate, efficient diagnoses. Several studies advocating artificial intelligence proposed COVID diagnosis methods on lung images with high accuracy. Furthermore, some affected areas in the lung images can be detected accurately by segmentation methods. This work has considered state-of-the-art Convolutional Neural Network architectures, combined with the Unet family and Feature Pyramid Network (FPN) for COVID segmentation tasks on Computed Tomography (CT) scanner samples from the Italian Society of Medical and Interventional Radiology dataset. The experiments show that the decoder-based Unet family has reached the best (a mean Intersection Over Union (mIoU) of 0.9234, 0.9032 in dice score, and a recall of 0.9349) with a combination between SE ResNeXt and Unet++. The decoder with the Unet family obtained better COVID segmentation performance in comparison with Feature Pyramid Network. Furthermore, the proposed method outperforms recent segmentation state-of-the-art approaches such as the SegNet-based network, ADID-UNET, and A-SegNet + FTL. Therefore, it is expected to provide good segmentation visualizations of medical images. PeerJ Inc. 2021-09-17 /pmc/articles/PMC8459784/ /pubmed/34616895 http://dx.doi.org/10.7717/peerj-cs.719 Text en © 2021 Nguyen et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Nguyen, Hai Thanh
Bao Tran, Toan
Luong, Huong Hoang
Nguyen Huynh, Tuan Khoi
Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images
title Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images
title_full Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images
title_fullStr Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images
title_full_unstemmed Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images
title_short Decoders configurations based on Unet family and feature pyramid network for COVID-19 segmentation on CT images
title_sort decoders configurations based on unet family and feature pyramid network for covid-19 segmentation on ct images
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8459784/
https://www.ncbi.nlm.nih.gov/pubmed/34616895
http://dx.doi.org/10.7717/peerj-cs.719
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