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R package for animal behavior classification from accelerometer data—rabc

Increasingly, animal behavior studies are enhanced through the use of accelerometry. To allow translation of raw accelerometer data to animal behaviors requires the development of classifiers. Here, we present the “rabc” (r for animal behavior classification) package to assist researchers with the i...

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Detalles Bibliográficos
Autores principales: Yu, Hui, Klaassen, Marcel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462134/
https://www.ncbi.nlm.nih.gov/pubmed/34594505
http://dx.doi.org/10.1002/ece3.7937
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author Yu, Hui
Klaassen, Marcel
author_facet Yu, Hui
Klaassen, Marcel
author_sort Yu, Hui
collection PubMed
description Increasingly, animal behavior studies are enhanced through the use of accelerometry. To allow translation of raw accelerometer data to animal behaviors requires the development of classifiers. Here, we present the “rabc” (r for animal behavior classification) package to assist researchers with the interactive development of such animal behavior classifiers in a supervised classification approach. The package uses datasets consisting of accelerometer data with their corresponding animal behaviors (e.g., for triaxial accelerometer data along the x, y and z axes arranged as “x, y, z, x, y, z,…, behavior”). Using an example dataset collected on white stork (Ciconia ciconia), we illustrate the workflow of this package, including accelerometer data visualization, feature calculation, feature selection, feature visualization, extreme gradient boost model training, validation, and, finally, a demonstration of the behavior classification results.
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spelling pubmed-84621342021-09-29 R package for animal behavior classification from accelerometer data—rabc Yu, Hui Klaassen, Marcel Ecol Evol Original Research Increasingly, animal behavior studies are enhanced through the use of accelerometry. To allow translation of raw accelerometer data to animal behaviors requires the development of classifiers. Here, we present the “rabc” (r for animal behavior classification) package to assist researchers with the interactive development of such animal behavior classifiers in a supervised classification approach. The package uses datasets consisting of accelerometer data with their corresponding animal behaviors (e.g., for triaxial accelerometer data along the x, y and z axes arranged as “x, y, z, x, y, z,…, behavior”). Using an example dataset collected on white stork (Ciconia ciconia), we illustrate the workflow of this package, including accelerometer data visualization, feature calculation, feature selection, feature visualization, extreme gradient boost model training, validation, and, finally, a demonstration of the behavior classification results. John Wiley and Sons Inc. 2021-08-20 /pmc/articles/PMC8462134/ /pubmed/34594505 http://dx.doi.org/10.1002/ece3.7937 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Yu, Hui
Klaassen, Marcel
R package for animal behavior classification from accelerometer data—rabc
title R package for animal behavior classification from accelerometer data—rabc
title_full R package for animal behavior classification from accelerometer data—rabc
title_fullStr R package for animal behavior classification from accelerometer data—rabc
title_full_unstemmed R package for animal behavior classification from accelerometer data—rabc
title_short R package for animal behavior classification from accelerometer data—rabc
title_sort r package for animal behavior classification from accelerometer data—rabc
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462134/
https://www.ncbi.nlm.nih.gov/pubmed/34594505
http://dx.doi.org/10.1002/ece3.7937
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