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R package for animal behavior classification from accelerometer data—rabc
Increasingly, animal behavior studies are enhanced through the use of accelerometry. To allow translation of raw accelerometer data to animal behaviors requires the development of classifiers. Here, we present the “rabc” (r for animal behavior classification) package to assist researchers with the i...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462134/ https://www.ncbi.nlm.nih.gov/pubmed/34594505 http://dx.doi.org/10.1002/ece3.7937 |
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author | Yu, Hui Klaassen, Marcel |
author_facet | Yu, Hui Klaassen, Marcel |
author_sort | Yu, Hui |
collection | PubMed |
description | Increasingly, animal behavior studies are enhanced through the use of accelerometry. To allow translation of raw accelerometer data to animal behaviors requires the development of classifiers. Here, we present the “rabc” (r for animal behavior classification) package to assist researchers with the interactive development of such animal behavior classifiers in a supervised classification approach. The package uses datasets consisting of accelerometer data with their corresponding animal behaviors (e.g., for triaxial accelerometer data along the x, y and z axes arranged as “x, y, z, x, y, z,…, behavior”). Using an example dataset collected on white stork (Ciconia ciconia), we illustrate the workflow of this package, including accelerometer data visualization, feature calculation, feature selection, feature visualization, extreme gradient boost model training, validation, and, finally, a demonstration of the behavior classification results. |
format | Online Article Text |
id | pubmed-8462134 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84621342021-09-29 R package for animal behavior classification from accelerometer data—rabc Yu, Hui Klaassen, Marcel Ecol Evol Original Research Increasingly, animal behavior studies are enhanced through the use of accelerometry. To allow translation of raw accelerometer data to animal behaviors requires the development of classifiers. Here, we present the “rabc” (r for animal behavior classification) package to assist researchers with the interactive development of such animal behavior classifiers in a supervised classification approach. The package uses datasets consisting of accelerometer data with their corresponding animal behaviors (e.g., for triaxial accelerometer data along the x, y and z axes arranged as “x, y, z, x, y, z,…, behavior”). Using an example dataset collected on white stork (Ciconia ciconia), we illustrate the workflow of this package, including accelerometer data visualization, feature calculation, feature selection, feature visualization, extreme gradient boost model training, validation, and, finally, a demonstration of the behavior classification results. John Wiley and Sons Inc. 2021-08-20 /pmc/articles/PMC8462134/ /pubmed/34594505 http://dx.doi.org/10.1002/ece3.7937 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Yu, Hui Klaassen, Marcel R package for animal behavior classification from accelerometer data—rabc |
title | R package for animal behavior classification from accelerometer data—rabc |
title_full | R package for animal behavior classification from accelerometer data—rabc |
title_fullStr | R package for animal behavior classification from accelerometer data—rabc |
title_full_unstemmed | R package for animal behavior classification from accelerometer data—rabc |
title_short | R package for animal behavior classification from accelerometer data—rabc |
title_sort | r package for animal behavior classification from accelerometer data—rabc |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462134/ https://www.ncbi.nlm.nih.gov/pubmed/34594505 http://dx.doi.org/10.1002/ece3.7937 |
work_keys_str_mv | AT yuhui rpackageforanimalbehaviorclassificationfromaccelerometerdatarabc AT klaassenmarcel rpackageforanimalbehaviorclassificationfromaccelerometerdatarabc |