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Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462724/ https://www.ncbi.nlm.nih.gov/pubmed/34559835 http://dx.doi.org/10.1371/journal.pone.0256579 |
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author | Niu, Hongli Xia, Pengliang Hu, Yifeng Zhan, Chuang Li, Yiting Gong, Shuangjun Li, Yan Ma, Dongfang |
author_facet | Niu, Hongli Xia, Pengliang Hu, Yifeng Zhan, Chuang Li, Yiting Gong, Shuangjun Li, Yan Ma, Dongfang |
author_sort | Niu, Hongli |
collection | PubMed |
description | ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first time in wheat. A total of 37 TaZF-HD genes were identified and divided into TaMIF and TaZHD subfamilies according to the conserved domain. The phylogeny tree of the TaZF-HD proteins was further divided into six groups based on the phylogenetic relationship. The 37 TaZF-HDs were distributed on 18 of 21 chromosomes, and almost all the genes had no introns. Gene duplication and Ka/Ks analysis showed that the gene family may have experienced powerful purification selection pressure during wheat evolution. The qRT-PCR analysis showed that TaZF-HD genes had significant expression patterns in different biotic stress and abiotic stress. Through subcellular localization experiments, we found that TaZHD6-3B was located in the nucleus, while TaMIF4-5D was located in the cell membrane and nucleus. Our research contributes to a comprehensive understanding of the TaZF-HD family, provides a new perspective for further research on the biological functions of TaZF-HD genes in wheat. |
format | Online Article Text |
id | pubmed-8462724 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-84627242021-09-25 Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis Niu, Hongli Xia, Pengliang Hu, Yifeng Zhan, Chuang Li, Yiting Gong, Shuangjun Li, Yan Ma, Dongfang PLoS One Research Article ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first time in wheat. A total of 37 TaZF-HD genes were identified and divided into TaMIF and TaZHD subfamilies according to the conserved domain. The phylogeny tree of the TaZF-HD proteins was further divided into six groups based on the phylogenetic relationship. The 37 TaZF-HDs were distributed on 18 of 21 chromosomes, and almost all the genes had no introns. Gene duplication and Ka/Ks analysis showed that the gene family may have experienced powerful purification selection pressure during wheat evolution. The qRT-PCR analysis showed that TaZF-HD genes had significant expression patterns in different biotic stress and abiotic stress. Through subcellular localization experiments, we found that TaZHD6-3B was located in the nucleus, while TaMIF4-5D was located in the cell membrane and nucleus. Our research contributes to a comprehensive understanding of the TaZF-HD family, provides a new perspective for further research on the biological functions of TaZF-HD genes in wheat. Public Library of Science 2021-09-24 /pmc/articles/PMC8462724/ /pubmed/34559835 http://dx.doi.org/10.1371/journal.pone.0256579 Text en © 2021 Niu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Niu, Hongli Xia, Pengliang Hu, Yifeng Zhan, Chuang Li, Yiting Gong, Shuangjun Li, Yan Ma, Dongfang Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis |
title | Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis |
title_full | Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis |
title_fullStr | Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis |
title_full_unstemmed | Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis |
title_short | Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis |
title_sort | genome-wide identification of zf-hd gene family in triticum aestivum: molecular evolution mechanism and function analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462724/ https://www.ncbi.nlm.nih.gov/pubmed/34559835 http://dx.doi.org/10.1371/journal.pone.0256579 |
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