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Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis

ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first t...

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Autores principales: Niu, Hongli, Xia, Pengliang, Hu, Yifeng, Zhan, Chuang, Li, Yiting, Gong, Shuangjun, Li, Yan, Ma, Dongfang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462724/
https://www.ncbi.nlm.nih.gov/pubmed/34559835
http://dx.doi.org/10.1371/journal.pone.0256579
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author Niu, Hongli
Xia, Pengliang
Hu, Yifeng
Zhan, Chuang
Li, Yiting
Gong, Shuangjun
Li, Yan
Ma, Dongfang
author_facet Niu, Hongli
Xia, Pengliang
Hu, Yifeng
Zhan, Chuang
Li, Yiting
Gong, Shuangjun
Li, Yan
Ma, Dongfang
author_sort Niu, Hongli
collection PubMed
description ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first time in wheat. A total of 37 TaZF-HD genes were identified and divided into TaMIF and TaZHD subfamilies according to the conserved domain. The phylogeny tree of the TaZF-HD proteins was further divided into six groups based on the phylogenetic relationship. The 37 TaZF-HDs were distributed on 18 of 21 chromosomes, and almost all the genes had no introns. Gene duplication and Ka/Ks analysis showed that the gene family may have experienced powerful purification selection pressure during wheat evolution. The qRT-PCR analysis showed that TaZF-HD genes had significant expression patterns in different biotic stress and abiotic stress. Through subcellular localization experiments, we found that TaZHD6-3B was located in the nucleus, while TaMIF4-5D was located in the cell membrane and nucleus. Our research contributes to a comprehensive understanding of the TaZF-HD family, provides a new perspective for further research on the biological functions of TaZF-HD genes in wheat.
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spelling pubmed-84627242021-09-25 Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis Niu, Hongli Xia, Pengliang Hu, Yifeng Zhan, Chuang Li, Yiting Gong, Shuangjun Li, Yan Ma, Dongfang PLoS One Research Article ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first time in wheat. A total of 37 TaZF-HD genes were identified and divided into TaMIF and TaZHD subfamilies according to the conserved domain. The phylogeny tree of the TaZF-HD proteins was further divided into six groups based on the phylogenetic relationship. The 37 TaZF-HDs were distributed on 18 of 21 chromosomes, and almost all the genes had no introns. Gene duplication and Ka/Ks analysis showed that the gene family may have experienced powerful purification selection pressure during wheat evolution. The qRT-PCR analysis showed that TaZF-HD genes had significant expression patterns in different biotic stress and abiotic stress. Through subcellular localization experiments, we found that TaZHD6-3B was located in the nucleus, while TaMIF4-5D was located in the cell membrane and nucleus. Our research contributes to a comprehensive understanding of the TaZF-HD family, provides a new perspective for further research on the biological functions of TaZF-HD genes in wheat. Public Library of Science 2021-09-24 /pmc/articles/PMC8462724/ /pubmed/34559835 http://dx.doi.org/10.1371/journal.pone.0256579 Text en © 2021 Niu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Niu, Hongli
Xia, Pengliang
Hu, Yifeng
Zhan, Chuang
Li, Yiting
Gong, Shuangjun
Li, Yan
Ma, Dongfang
Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
title Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
title_full Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
title_fullStr Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
title_full_unstemmed Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
title_short Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis
title_sort genome-wide identification of zf-hd gene family in triticum aestivum: molecular evolution mechanism and function analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462724/
https://www.ncbi.nlm.nih.gov/pubmed/34559835
http://dx.doi.org/10.1371/journal.pone.0256579
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