Cargando…

First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta

Schnabelia tetrodonta is a medicinal plant used in traditional Chinese medicine. However, the molecular biology data of the species was too scarce to bioprospect the medicinal species. In this study, the first complete chloroplast genome (cp) of S. tetrodonta was sequenced and assembled based on the...

Descripción completa

Detalles Bibliográficos
Autores principales: Ren, Fengming, Wang, Liqiang, Zhuo, Wei, Lu, Shenge, Zhu, Xiaofu, Liu, Chao, Yang, Meisen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462896/
https://www.ncbi.nlm.nih.gov/pubmed/34568558
http://dx.doi.org/10.1080/23802359.2021.1975507
_version_ 1784572296087732224
author Ren, Fengming
Wang, Liqiang
Zhuo, Wei
Lu, Shenge
Zhu, Xiaofu
Liu, Chao
Yang, Meisen
author_facet Ren, Fengming
Wang, Liqiang
Zhuo, Wei
Lu, Shenge
Zhu, Xiaofu
Liu, Chao
Yang, Meisen
author_sort Ren, Fengming
collection PubMed
description Schnabelia tetrodonta is a medicinal plant used in traditional Chinese medicine. However, the molecular biology data of the species was too scarce to bioprospect the medicinal species. In this study, the first complete chloroplast genome (cp) of S. tetrodonta was sequenced and assembled based on the next generation sequencing. The cp genome is 157,004 bp in length, including a large single-copy (LSC) region of 83,605 bp, a small single-copy (SSC) region of 36,899 bp, and a pair of inverted repeat (IR) regions of 18,250 bp each. The genome encodes 134 genes, including 90 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The GC content of whole genome is 37.80%. The phylogenetic analysis based on 20 complete cp sequences (19 genome sequences from the Teucrioideae of Lamiaceae and an outgroup of Ipomoea purpurea) revealed that S. tetrodonta was closely related to S. oligophylla.
format Online
Article
Text
id pubmed-8462896
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-84628962021-09-25 First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta Ren, Fengming Wang, Liqiang Zhuo, Wei Lu, Shenge Zhu, Xiaofu Liu, Chao Yang, Meisen Mitochondrial DNA B Resour Mitogenome Announcement Schnabelia tetrodonta is a medicinal plant used in traditional Chinese medicine. However, the molecular biology data of the species was too scarce to bioprospect the medicinal species. In this study, the first complete chloroplast genome (cp) of S. tetrodonta was sequenced and assembled based on the next generation sequencing. The cp genome is 157,004 bp in length, including a large single-copy (LSC) region of 83,605 bp, a small single-copy (SSC) region of 36,899 bp, and a pair of inverted repeat (IR) regions of 18,250 bp each. The genome encodes 134 genes, including 90 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The GC content of whole genome is 37.80%. The phylogenetic analysis based on 20 complete cp sequences (19 genome sequences from the Teucrioideae of Lamiaceae and an outgroup of Ipomoea purpurea) revealed that S. tetrodonta was closely related to S. oligophylla. Taylor & Francis 2021-09-20 /pmc/articles/PMC8462896/ /pubmed/34568558 http://dx.doi.org/10.1080/23802359.2021.1975507 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ren, Fengming
Wang, Liqiang
Zhuo, Wei
Lu, Shenge
Zhu, Xiaofu
Liu, Chao
Yang, Meisen
First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
title First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
title_full First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
title_fullStr First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
title_full_unstemmed First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
title_short First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
title_sort first complete chloroplast genome of the rare medicinal plant schnabelia tetrodonta
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462896/
https://www.ncbi.nlm.nih.gov/pubmed/34568558
http://dx.doi.org/10.1080/23802359.2021.1975507
work_keys_str_mv AT renfengming firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta
AT wangliqiang firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta
AT zhuowei firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta
AT lushenge firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta
AT zhuxiaofu firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta
AT liuchao firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta
AT yangmeisen firstcompletechloroplastgenomeoftheraremedicinalplantschnabeliatetrodonta