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First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta
Schnabelia tetrodonta is a medicinal plant used in traditional Chinese medicine. However, the molecular biology data of the species was too scarce to bioprospect the medicinal species. In this study, the first complete chloroplast genome (cp) of S. tetrodonta was sequenced and assembled based on the...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462896/ https://www.ncbi.nlm.nih.gov/pubmed/34568558 http://dx.doi.org/10.1080/23802359.2021.1975507 |
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author | Ren, Fengming Wang, Liqiang Zhuo, Wei Lu, Shenge Zhu, Xiaofu Liu, Chao Yang, Meisen |
author_facet | Ren, Fengming Wang, Liqiang Zhuo, Wei Lu, Shenge Zhu, Xiaofu Liu, Chao Yang, Meisen |
author_sort | Ren, Fengming |
collection | PubMed |
description | Schnabelia tetrodonta is a medicinal plant used in traditional Chinese medicine. However, the molecular biology data of the species was too scarce to bioprospect the medicinal species. In this study, the first complete chloroplast genome (cp) of S. tetrodonta was sequenced and assembled based on the next generation sequencing. The cp genome is 157,004 bp in length, including a large single-copy (LSC) region of 83,605 bp, a small single-copy (SSC) region of 36,899 bp, and a pair of inverted repeat (IR) regions of 18,250 bp each. The genome encodes 134 genes, including 90 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The GC content of whole genome is 37.80%. The phylogenetic analysis based on 20 complete cp sequences (19 genome sequences from the Teucrioideae of Lamiaceae and an outgroup of Ipomoea purpurea) revealed that S. tetrodonta was closely related to S. oligophylla. |
format | Online Article Text |
id | pubmed-8462896 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84628962021-09-25 First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta Ren, Fengming Wang, Liqiang Zhuo, Wei Lu, Shenge Zhu, Xiaofu Liu, Chao Yang, Meisen Mitochondrial DNA B Resour Mitogenome Announcement Schnabelia tetrodonta is a medicinal plant used in traditional Chinese medicine. However, the molecular biology data of the species was too scarce to bioprospect the medicinal species. In this study, the first complete chloroplast genome (cp) of S. tetrodonta was sequenced and assembled based on the next generation sequencing. The cp genome is 157,004 bp in length, including a large single-copy (LSC) region of 83,605 bp, a small single-copy (SSC) region of 36,899 bp, and a pair of inverted repeat (IR) regions of 18,250 bp each. The genome encodes 134 genes, including 90 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The GC content of whole genome is 37.80%. The phylogenetic analysis based on 20 complete cp sequences (19 genome sequences from the Teucrioideae of Lamiaceae and an outgroup of Ipomoea purpurea) revealed that S. tetrodonta was closely related to S. oligophylla. Taylor & Francis 2021-09-20 /pmc/articles/PMC8462896/ /pubmed/34568558 http://dx.doi.org/10.1080/23802359.2021.1975507 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ren, Fengming Wang, Liqiang Zhuo, Wei Lu, Shenge Zhu, Xiaofu Liu, Chao Yang, Meisen First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta |
title | First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta |
title_full | First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta |
title_fullStr | First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta |
title_full_unstemmed | First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta |
title_short | First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta |
title_sort | first complete chloroplast genome of the rare medicinal plant schnabelia tetrodonta |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462896/ https://www.ncbi.nlm.nih.gov/pubmed/34568558 http://dx.doi.org/10.1080/23802359.2021.1975507 |
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