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The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea
We sequenced the complete chloroplast genome of Asplenium komarovii Akasawa (syn: Asplenium scolopendrium L. subsp. japonicum (Komarov) Rasbach, Reichstein & Viane), which is designated as a rare species in South Korea. The complete chloroplast genome is 149,393 bp in total length and comprised...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462912/ https://www.ncbi.nlm.nih.gov/pubmed/34568564 http://dx.doi.org/10.1080/23802359.2021.1961624 |
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author | Heo, Namjoo Yun, Seona Fernando, Danilo D. |
author_facet | Heo, Namjoo Yun, Seona Fernando, Danilo D. |
author_sort | Heo, Namjoo |
collection | PubMed |
description | We sequenced the complete chloroplast genome of Asplenium komarovii Akasawa (syn: Asplenium scolopendrium L. subsp. japonicum (Komarov) Rasbach, Reichstein & Viane), which is designated as a rare species in South Korea. The complete chloroplast genome is 149,393 bp in total length and comprised of the following regions: large single copy (82,464 bp), small single copy (21,345 bp), and a pair of inverted repeats (22,792 bp). The overall GC content is 40.9% and the genome encoded a total of 115 genes, including 84 protein-coding, 27 transfer RNA, and 4 ribosomal RNA genes. Phylogenetic analysis based on 21 representative chloroplast genomes of the suborder Aspleniineae (and one outgroup) indicates that Aspleniaceae is monophyletic and sister to Diplaziopsidaceae, with Rhadidosoraceae as the basal group in this three family clade. Asplenium komarovii is sister to A. nidus and A. prolongatum with strong bootstrap support. The chloroplast genome of A. komarovii will be useful in establishing its relationships within the A. scolopendrium complex, which is currently unresolved. |
format | Online Article Text |
id | pubmed-8462912 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84629122021-09-25 The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea Heo, Namjoo Yun, Seona Fernando, Danilo D. Mitochondrial DNA B Resour Mitogenome Announcement We sequenced the complete chloroplast genome of Asplenium komarovii Akasawa (syn: Asplenium scolopendrium L. subsp. japonicum (Komarov) Rasbach, Reichstein & Viane), which is designated as a rare species in South Korea. The complete chloroplast genome is 149,393 bp in total length and comprised of the following regions: large single copy (82,464 bp), small single copy (21,345 bp), and a pair of inverted repeats (22,792 bp). The overall GC content is 40.9% and the genome encoded a total of 115 genes, including 84 protein-coding, 27 transfer RNA, and 4 ribosomal RNA genes. Phylogenetic analysis based on 21 representative chloroplast genomes of the suborder Aspleniineae (and one outgroup) indicates that Aspleniaceae is monophyletic and sister to Diplaziopsidaceae, with Rhadidosoraceae as the basal group in this three family clade. Asplenium komarovii is sister to A. nidus and A. prolongatum with strong bootstrap support. The chloroplast genome of A. komarovii will be useful in establishing its relationships within the A. scolopendrium complex, which is currently unresolved. Taylor & Francis 2021-09-22 /pmc/articles/PMC8462912/ /pubmed/34568564 http://dx.doi.org/10.1080/23802359.2021.1961624 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Heo, Namjoo Yun, Seona Fernando, Danilo D. The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
title | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
title_full | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
title_fullStr | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
title_full_unstemmed | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
title_short | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
title_sort | complete chloroplast genome sequence of asplenium komarovii akasawa, a rare fern in south korea |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462912/ https://www.ncbi.nlm.nih.gov/pubmed/34568564 http://dx.doi.org/10.1080/23802359.2021.1961624 |
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