The complete chloroplast genome of weedy rice Oryza sativa f. spontanea

The emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contain...

Descripción completa

Detalles Bibliográficos
Autores principales: Dong, Chenfeng, Hu, Yiyu, Ye, Chuyu, Fan, Longjiang, Guo, Longbiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462929/
https://www.ncbi.nlm.nih.gov/pubmed/34568568
http://dx.doi.org/10.1080/23802359.2021.1977197
_version_ 1784572304716464128
author Dong, Chenfeng
Hu, Yiyu
Ye, Chuyu
Fan, Longjiang
Guo, Longbiao
author_facet Dong, Chenfeng
Hu, Yiyu
Ye, Chuyu
Fan, Longjiang
Guo, Longbiao
author_sort Dong, Chenfeng
collection PubMed
description The emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contains a large single-copy (LSC, 80,549 bp), a small single-copy (SSC, 12,347 bp) and a pair of inverted repeats (IRa and IRb, 20,803 bp each). A total of 132 unique genes were annotated, including 82 protein-coding genes, 42 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that O. sativa f. spontanea (indica type) appears closely related to cultivated indica rice rather than wild rice, supporting the hypothesis that weedy rice originated from cultivated rice.
format Online
Article
Text
id pubmed-8462929
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-84629292021-09-25 The complete chloroplast genome of weedy rice Oryza sativa f. spontanea Dong, Chenfeng Hu, Yiyu Ye, Chuyu Fan, Longjiang Guo, Longbiao Mitochondrial DNA B Resour Mitogenome Announcement The emergence of weedy rice (Oryza sativa f. spontanea) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of O. sativa f. spontanea with the length of 134,502 bp. The assembly contains a large single-copy (LSC, 80,549 bp), a small single-copy (SSC, 12,347 bp) and a pair of inverted repeats (IRa and IRb, 20,803 bp each). A total of 132 unique genes were annotated, including 82 protein-coding genes, 42 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that O. sativa f. spontanea (indica type) appears closely related to cultivated indica rice rather than wild rice, supporting the hypothesis that weedy rice originated from cultivated rice. Taylor & Francis 2021-09-22 /pmc/articles/PMC8462929/ /pubmed/34568568 http://dx.doi.org/10.1080/23802359.2021.1977197 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Dong, Chenfeng
Hu, Yiyu
Ye, Chuyu
Fan, Longjiang
Guo, Longbiao
The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
title The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
title_full The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
title_fullStr The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
title_full_unstemmed The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
title_short The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
title_sort complete chloroplast genome of weedy rice oryza sativa f. spontanea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8462929/
https://www.ncbi.nlm.nih.gov/pubmed/34568568
http://dx.doi.org/10.1080/23802359.2021.1977197
work_keys_str_mv AT dongchenfeng thecompletechloroplastgenomeofweedyriceoryzasativafspontanea
AT huyiyu thecompletechloroplastgenomeofweedyriceoryzasativafspontanea
AT yechuyu thecompletechloroplastgenomeofweedyriceoryzasativafspontanea
AT fanlongjiang thecompletechloroplastgenomeofweedyriceoryzasativafspontanea
AT guolongbiao thecompletechloroplastgenomeofweedyriceoryzasativafspontanea
AT dongchenfeng completechloroplastgenomeofweedyriceoryzasativafspontanea
AT huyiyu completechloroplastgenomeofweedyriceoryzasativafspontanea
AT yechuyu completechloroplastgenomeofweedyriceoryzasativafspontanea
AT fanlongjiang completechloroplastgenomeofweedyriceoryzasativafspontanea
AT guolongbiao completechloroplastgenomeofweedyriceoryzasativafspontanea

Ejemplares similares