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Machine learning potentials for complex aqueous systems made simple
Simulation techniques based on accurate and efficient representations of potential energy surfaces are urgently needed for the understanding of complex systems such as solid–liquid interfaces. Here we present a machine learning framework that enables the efficient development and validation of model...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8463804/ https://www.ncbi.nlm.nih.gov/pubmed/34518232 http://dx.doi.org/10.1073/pnas.2110077118 |
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author | Schran, Christoph Thiemann, Fabian L. Rowe, Patrick Müller, Erich A. Marsalek, Ondrej Michaelides, Angelos |
author_facet | Schran, Christoph Thiemann, Fabian L. Rowe, Patrick Müller, Erich A. Marsalek, Ondrej Michaelides, Angelos |
author_sort | Schran, Christoph |
collection | PubMed |
description | Simulation techniques based on accurate and efficient representations of potential energy surfaces are urgently needed for the understanding of complex systems such as solid–liquid interfaces. Here we present a machine learning framework that enables the efficient development and validation of models for complex aqueous systems. Instead of trying to deliver a globally optimal machine learning potential, we propose to develop models applicable to specific thermodynamic state points in a simple and user-friendly process. After an initial ab initio simulation, a machine learning potential is constructed with minimum human effort through a data-driven active learning protocol. Such models can afterward be applied in exhaustive simulations to provide reliable answers for the scientific question at hand or to systematically explore the thermal performance of ab initio methods. We showcase this methodology on a diverse set of aqueous systems comprising bulk water with different ions in solution, water on a titanium dioxide surface, and water confined in nanotubes and between molybdenum disulfide sheets. Highlighting the accuracy of our approach with respect to the underlying ab initio reference, the resulting models are evaluated in detail with an automated validation protocol that includes structural and dynamical properties and the precision of the force prediction of the models. Finally, we demonstrate the capabilities of our approach for the description of water on the rutile titanium dioxide (110) surface to analyze the structure and mobility of water on this surface. Such machine learning models provide a straightforward and uncomplicated but accurate extension of simulation time and length scales for complex systems. |
format | Online Article Text |
id | pubmed-8463804 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-84638042021-10-27 Machine learning potentials for complex aqueous systems made simple Schran, Christoph Thiemann, Fabian L. Rowe, Patrick Müller, Erich A. Marsalek, Ondrej Michaelides, Angelos Proc Natl Acad Sci U S A Physical Sciences Simulation techniques based on accurate and efficient representations of potential energy surfaces are urgently needed for the understanding of complex systems such as solid–liquid interfaces. Here we present a machine learning framework that enables the efficient development and validation of models for complex aqueous systems. Instead of trying to deliver a globally optimal machine learning potential, we propose to develop models applicable to specific thermodynamic state points in a simple and user-friendly process. After an initial ab initio simulation, a machine learning potential is constructed with minimum human effort through a data-driven active learning protocol. Such models can afterward be applied in exhaustive simulations to provide reliable answers for the scientific question at hand or to systematically explore the thermal performance of ab initio methods. We showcase this methodology on a diverse set of aqueous systems comprising bulk water with different ions in solution, water on a titanium dioxide surface, and water confined in nanotubes and between molybdenum disulfide sheets. Highlighting the accuracy of our approach with respect to the underlying ab initio reference, the resulting models are evaluated in detail with an automated validation protocol that includes structural and dynamical properties and the precision of the force prediction of the models. Finally, we demonstrate the capabilities of our approach for the description of water on the rutile titanium dioxide (110) surface to analyze the structure and mobility of water on this surface. Such machine learning models provide a straightforward and uncomplicated but accurate extension of simulation time and length scales for complex systems. National Academy of Sciences 2021-09-21 2021-09-13 /pmc/articles/PMC8463804/ /pubmed/34518232 http://dx.doi.org/10.1073/pnas.2110077118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Schran, Christoph Thiemann, Fabian L. Rowe, Patrick Müller, Erich A. Marsalek, Ondrej Michaelides, Angelos Machine learning potentials for complex aqueous systems made simple |
title | Machine learning potentials for complex aqueous systems made simple |
title_full | Machine learning potentials for complex aqueous systems made simple |
title_fullStr | Machine learning potentials for complex aqueous systems made simple |
title_full_unstemmed | Machine learning potentials for complex aqueous systems made simple |
title_short | Machine learning potentials for complex aqueous systems made simple |
title_sort | machine learning potentials for complex aqueous systems made simple |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8463804/ https://www.ncbi.nlm.nih.gov/pubmed/34518232 http://dx.doi.org/10.1073/pnas.2110077118 |
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