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Machine learning potentials for complex aqueous systems made simple

Simulation techniques based on accurate and efficient representations of potential energy surfaces are urgently needed for the understanding of complex systems such as solid–liquid interfaces. Here we present a machine learning framework that enables the efficient development and validation of model...

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Autores principales: Schran, Christoph, Thiemann, Fabian L., Rowe, Patrick, Müller, Erich A., Marsalek, Ondrej, Michaelides, Angelos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8463804/
https://www.ncbi.nlm.nih.gov/pubmed/34518232
http://dx.doi.org/10.1073/pnas.2110077118
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author Schran, Christoph
Thiemann, Fabian L.
Rowe, Patrick
Müller, Erich A.
Marsalek, Ondrej
Michaelides, Angelos
author_facet Schran, Christoph
Thiemann, Fabian L.
Rowe, Patrick
Müller, Erich A.
Marsalek, Ondrej
Michaelides, Angelos
author_sort Schran, Christoph
collection PubMed
description Simulation techniques based on accurate and efficient representations of potential energy surfaces are urgently needed for the understanding of complex systems such as solid–liquid interfaces. Here we present a machine learning framework that enables the efficient development and validation of models for complex aqueous systems. Instead of trying to deliver a globally optimal machine learning potential, we propose to develop models applicable to specific thermodynamic state points in a simple and user-friendly process. After an initial ab initio simulation, a machine learning potential is constructed with minimum human effort through a data-driven active learning protocol. Such models can afterward be applied in exhaustive simulations to provide reliable answers for the scientific question at hand or to systematically explore the thermal performance of ab initio methods. We showcase this methodology on a diverse set of aqueous systems comprising bulk water with different ions in solution, water on a titanium dioxide surface, and water confined in nanotubes and between molybdenum disulfide sheets. Highlighting the accuracy of our approach with respect to the underlying ab initio reference, the resulting models are evaluated in detail with an automated validation protocol that includes structural and dynamical properties and the precision of the force prediction of the models. Finally, we demonstrate the capabilities of our approach for the description of water on the rutile titanium dioxide (110) surface to analyze the structure and mobility of water on this surface. Such machine learning models provide a straightforward and uncomplicated but accurate extension of simulation time and length scales for complex systems.
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spelling pubmed-84638042021-10-27 Machine learning potentials for complex aqueous systems made simple Schran, Christoph Thiemann, Fabian L. Rowe, Patrick Müller, Erich A. Marsalek, Ondrej Michaelides, Angelos Proc Natl Acad Sci U S A Physical Sciences Simulation techniques based on accurate and efficient representations of potential energy surfaces are urgently needed for the understanding of complex systems such as solid–liquid interfaces. Here we present a machine learning framework that enables the efficient development and validation of models for complex aqueous systems. Instead of trying to deliver a globally optimal machine learning potential, we propose to develop models applicable to specific thermodynamic state points in a simple and user-friendly process. After an initial ab initio simulation, a machine learning potential is constructed with minimum human effort through a data-driven active learning protocol. Such models can afterward be applied in exhaustive simulations to provide reliable answers for the scientific question at hand or to systematically explore the thermal performance of ab initio methods. We showcase this methodology on a diverse set of aqueous systems comprising bulk water with different ions in solution, water on a titanium dioxide surface, and water confined in nanotubes and between molybdenum disulfide sheets. Highlighting the accuracy of our approach with respect to the underlying ab initio reference, the resulting models are evaluated in detail with an automated validation protocol that includes structural and dynamical properties and the precision of the force prediction of the models. Finally, we demonstrate the capabilities of our approach for the description of water on the rutile titanium dioxide (110) surface to analyze the structure and mobility of water on this surface. Such machine learning models provide a straightforward and uncomplicated but accurate extension of simulation time and length scales for complex systems. National Academy of Sciences 2021-09-21 2021-09-13 /pmc/articles/PMC8463804/ /pubmed/34518232 http://dx.doi.org/10.1073/pnas.2110077118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Schran, Christoph
Thiemann, Fabian L.
Rowe, Patrick
Müller, Erich A.
Marsalek, Ondrej
Michaelides, Angelos
Machine learning potentials for complex aqueous systems made simple
title Machine learning potentials for complex aqueous systems made simple
title_full Machine learning potentials for complex aqueous systems made simple
title_fullStr Machine learning potentials for complex aqueous systems made simple
title_full_unstemmed Machine learning potentials for complex aqueous systems made simple
title_short Machine learning potentials for complex aqueous systems made simple
title_sort machine learning potentials for complex aqueous systems made simple
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8463804/
https://www.ncbi.nlm.nih.gov/pubmed/34518232
http://dx.doi.org/10.1073/pnas.2110077118
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