Cargando…

Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress

BACKGROUND: Heat shock proteins (HSPs) perform a fundamental role in protecting plants against abiotic stresses. Individual family members have been analyzed in previous studies, but there has not yet been a comprehensive analysis of the HSP70 gene family in Pyropia yezoensis. RESULTS: We investigat...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Xinzi, Mo, Zhaolan, Tang, Xianghai, Gao, Tian, Mao, Yunxiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8464122/
https://www.ncbi.nlm.nih.gov/pubmed/34560838
http://dx.doi.org/10.1186/s12870-021-03213-0
_version_ 1784572554614145024
author Yu, Xinzi
Mo, Zhaolan
Tang, Xianghai
Gao, Tian
Mao, Yunxiang
author_facet Yu, Xinzi
Mo, Zhaolan
Tang, Xianghai
Gao, Tian
Mao, Yunxiang
author_sort Yu, Xinzi
collection PubMed
description BACKGROUND: Heat shock proteins (HSPs) perform a fundamental role in protecting plants against abiotic stresses. Individual family members have been analyzed in previous studies, but there has not yet been a comprehensive analysis of the HSP70 gene family in Pyropia yezoensis. RESULTS: We investigated 15 putative HSP70 genes in Py. yezoensis. These genes were classified into two sub-families, denoted as DnaK and Hsp110. In each sub-family, there was relative conservation of the gene structure and motif. Synteny-based analysis indicated that seven and three PyyHSP70 genes were orthologous to HSP70 genes in Pyropia haitanensis and Porphyra umbilicalis, respectively. Most PyyHSP70s showed up-regulated expression under different degrees of dehydration stress. PyyHSP70-1 and PyyHSP70-3 were expressed in higher degrees compared with other PyyHSP70s in dehydration treatments, and then expression degrees somewhat decreased in rehydration treatment. Subcellular localization showed PyyHSP70-1-GFP and PyyHSP70-3-GFP were in the cytoplasm and nucleus/cytoplasm, respectively. Similar expression patterns of paired orthologs in Py. yezoensis and Py. haitanensis suggest important roles for HSP70s in intertidal environmental adaptation during evolution. CONCLUSIONS: These findings provide insight into the evolution and modification of the PyyHSP70 gene family and will help to determine the functions of the HSP70 genes in Py. yezoensis growth and development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-021-03213-0.
format Online
Article
Text
id pubmed-8464122
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-84641222021-09-27 Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress Yu, Xinzi Mo, Zhaolan Tang, Xianghai Gao, Tian Mao, Yunxiang BMC Plant Biol Research BACKGROUND: Heat shock proteins (HSPs) perform a fundamental role in protecting plants against abiotic stresses. Individual family members have been analyzed in previous studies, but there has not yet been a comprehensive analysis of the HSP70 gene family in Pyropia yezoensis. RESULTS: We investigated 15 putative HSP70 genes in Py. yezoensis. These genes were classified into two sub-families, denoted as DnaK and Hsp110. In each sub-family, there was relative conservation of the gene structure and motif. Synteny-based analysis indicated that seven and three PyyHSP70 genes were orthologous to HSP70 genes in Pyropia haitanensis and Porphyra umbilicalis, respectively. Most PyyHSP70s showed up-regulated expression under different degrees of dehydration stress. PyyHSP70-1 and PyyHSP70-3 were expressed in higher degrees compared with other PyyHSP70s in dehydration treatments, and then expression degrees somewhat decreased in rehydration treatment. Subcellular localization showed PyyHSP70-1-GFP and PyyHSP70-3-GFP were in the cytoplasm and nucleus/cytoplasm, respectively. Similar expression patterns of paired orthologs in Py. yezoensis and Py. haitanensis suggest important roles for HSP70s in intertidal environmental adaptation during evolution. CONCLUSIONS: These findings provide insight into the evolution and modification of the PyyHSP70 gene family and will help to determine the functions of the HSP70 genes in Py. yezoensis growth and development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-021-03213-0. BioMed Central 2021-09-24 /pmc/articles/PMC8464122/ /pubmed/34560838 http://dx.doi.org/10.1186/s12870-021-03213-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Yu, Xinzi
Mo, Zhaolan
Tang, Xianghai
Gao, Tian
Mao, Yunxiang
Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress
title Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress
title_full Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress
title_fullStr Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress
title_full_unstemmed Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress
title_short Genome-wide analysis of HSP70 gene superfamily in Pyropia yezoensis (Bangiales, Rhodophyta): identification, characterization and expression profiles in response to dehydration stress
title_sort genome-wide analysis of hsp70 gene superfamily in pyropia yezoensis (bangiales, rhodophyta): identification, characterization and expression profiles in response to dehydration stress
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8464122/
https://www.ncbi.nlm.nih.gov/pubmed/34560838
http://dx.doi.org/10.1186/s12870-021-03213-0
work_keys_str_mv AT yuxinzi genomewideanalysisofhsp70genesuperfamilyinpyropiayezoensisbangialesrhodophytaidentificationcharacterizationandexpressionprofilesinresponsetodehydrationstress
AT mozhaolan genomewideanalysisofhsp70genesuperfamilyinpyropiayezoensisbangialesrhodophytaidentificationcharacterizationandexpressionprofilesinresponsetodehydrationstress
AT tangxianghai genomewideanalysisofhsp70genesuperfamilyinpyropiayezoensisbangialesrhodophytaidentificationcharacterizationandexpressionprofilesinresponsetodehydrationstress
AT gaotian genomewideanalysisofhsp70genesuperfamilyinpyropiayezoensisbangialesrhodophytaidentificationcharacterizationandexpressionprofilesinresponsetodehydrationstress
AT maoyunxiang genomewideanalysisofhsp70genesuperfamilyinpyropiayezoensisbangialesrhodophytaidentificationcharacterizationandexpressionprofilesinresponsetodehydrationstress