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π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study

A series of N-pyridyl ureas bearing 1,2,4- (1a, 2a, and 3a) and 1,3,4-oxadiazole moiety (1b, 2b, 3b) was prepared and characterized by HRMS, (1)H and (13)C NMR spectroscopy, as well as X-ray diffraction. The inspection of the crystal structures of (1–3)a,b and the Hirshfeld surface analysis made pos...

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Autores principales: Baykov, Sergey V., Mikherdov, Alexander S., Novikov, Alexander S., Geyl, Kirill K., Tarasenko, Marina V., Gureev, Maxim A., Boyarskiy, Vadim P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8466036/
https://www.ncbi.nlm.nih.gov/pubmed/34577142
http://dx.doi.org/10.3390/molecules26185672
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author Baykov, Sergey V.
Mikherdov, Alexander S.
Novikov, Alexander S.
Geyl, Kirill K.
Tarasenko, Marina V.
Gureev, Maxim A.
Boyarskiy, Vadim P.
author_facet Baykov, Sergey V.
Mikherdov, Alexander S.
Novikov, Alexander S.
Geyl, Kirill K.
Tarasenko, Marina V.
Gureev, Maxim A.
Boyarskiy, Vadim P.
author_sort Baykov, Sergey V.
collection PubMed
description A series of N-pyridyl ureas bearing 1,2,4- (1a, 2a, and 3a) and 1,3,4-oxadiazole moiety (1b, 2b, 3b) was prepared and characterized by HRMS, (1)H and (13)C NMR spectroscopy, as well as X-ray diffraction. The inspection of the crystal structures of (1–3)a,b and the Hirshfeld surface analysis made possible the recognition of the (oxadiazole)···(pyridine) and (oxadiazole)···(oxadiazole) interactions. The presence of these interactions was confirmed theoretically by DFT calculations, including NCI analysis for experimentally determined crystal structures as well as QTAIM analysis for optimized equilibrium structures. The preformed database survey allowed the verification of additional examples of relevant (oxadiazole)···π interactions both in Cambridge Structural Database and in Protein Data Bank, including the cocrystal of commercial anti-HIV drug Raltegravir.
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spelling pubmed-84660362021-09-27 π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study Baykov, Sergey V. Mikherdov, Alexander S. Novikov, Alexander S. Geyl, Kirill K. Tarasenko, Marina V. Gureev, Maxim A. Boyarskiy, Vadim P. Molecules Article A series of N-pyridyl ureas bearing 1,2,4- (1a, 2a, and 3a) and 1,3,4-oxadiazole moiety (1b, 2b, 3b) was prepared and characterized by HRMS, (1)H and (13)C NMR spectroscopy, as well as X-ray diffraction. The inspection of the crystal structures of (1–3)a,b and the Hirshfeld surface analysis made possible the recognition of the (oxadiazole)···(pyridine) and (oxadiazole)···(oxadiazole) interactions. The presence of these interactions was confirmed theoretically by DFT calculations, including NCI analysis for experimentally determined crystal structures as well as QTAIM analysis for optimized equilibrium structures. The preformed database survey allowed the verification of additional examples of relevant (oxadiazole)···π interactions both in Cambridge Structural Database and in Protein Data Bank, including the cocrystal of commercial anti-HIV drug Raltegravir. MDPI 2021-09-18 /pmc/articles/PMC8466036/ /pubmed/34577142 http://dx.doi.org/10.3390/molecules26185672 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Baykov, Sergey V.
Mikherdov, Alexander S.
Novikov, Alexander S.
Geyl, Kirill K.
Tarasenko, Marina V.
Gureev, Maxim A.
Boyarskiy, Vadim P.
π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study
title π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study
title_full π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study
title_fullStr π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study
title_full_unstemmed π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study
title_short π–π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study
title_sort π–π noncovalent interaction involving 1,2,4- and 1,3,4-oxadiazole systems: the combined experimental, theoretical, and database study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8466036/
https://www.ncbi.nlm.nih.gov/pubmed/34577142
http://dx.doi.org/10.3390/molecules26185672
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