Cargando…

Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer

This study was designed to characterize the microbiomes of the lung tissues of lung cancer patients. RNA-sequencing was performed on lung tumor samples from 49 patients with lung cancer. Metatranscriptomics data were analyzed using SAMSA2 and Kraken2 software. 16S rRNA sequencing was also performed....

Descripción completa

Detalles Bibliográficos
Autores principales:	Chang, Ya-Sian, Hsu, Ming-Hung, Tu, Siang-Jyun, Yen, Ju-Chen, Lee, Ya-Ting, Fang, Hsin-Yuan, Chang, Jan-Gowth
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8466605/ https://www.ncbi.nlm.nih.gov/pubmed/34573440 http://dx.doi.org/10.3390/genes12091458

Ejemplares similares

The Fusion Gene Landscape in Taiwanese Patients with Non-Small Cell Lung Cancer
por: Chang, Ya-Sian, et al.
Publicado: (2021)

Genome-Wide Analysis of Prognostic Alternative Splicing Signature and Splicing Factors in Lung Adenocarcinoma
por: Chang, Ya-Sian, et al.
Publicado: (2020)

Mutation profile of non-small cell lung cancer revealed by next generation sequencing
por: Chang, Ya-Sian, et al.
Publicado: (2021)

Comprehensive Analysis and Drug Modulation of Human Endogenous Retrovirus in Hepatocellular Carcinomas
por: Chang, Ya-Sian, et al.
Publicado: (2023)

Whole genome and RNA sequencing analyses for 254 Taiwanese hepatocellular carcinomas
por: Chang, Ya-Sian, et al.
Publicado: (2023)

Dysregulation of Immune Cell Subpopulations in Atypical Hemolytic Uremic Syndrome
por: Chen, I-Ru, et al.
Publicado: (2023)

Male-Specific Long Noncoding RNA TTTY15 Inhibits Non-Small Cell Lung Cancer Proliferation and Metastasis via TBX4
por: Lai, I-Lu, et al.
Publicado: (2019)

Rapid detection of epidermal growth factor receptor mutations with multiplex PCR and primer extension in lung cancer
por: Lin, Ching-Hsiung, et al.
Publicado: (2010)

Single-cell RNA sequencing of immune cells in patients with acute gout
por: Chang, Jan-Gowth, et al.
Publicado: (2022)

Long noncoding RNA MIAT promotes non-small cell lung cancer proliferation and metastasis through MMP9 activation
por: Lai, I-Lu, et al.
Publicado: (2017)

Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach
por: Dessie, Eskezeia Yihunie, et al.
Publicado: (2021)

Metagenome and Metatranscriptome Profiling of Moderate and Severe COPD Sputum in Taiwanese Han Males
por: Lee, Shih-Wei, et al.
Publicado: (2016)

Down-regulated and Commonly mutated ALPK1 in Lung and Colorectal Cancers
por: Liao, Hsien-Feng, et al.
Publicado: (2016)

Long noncoding RNA TUG1 is downregulated in non-small cell lung cancer and can regulate CELF1 on binding to PRC2
por: Lin, Pei-Chin, et al.
Publicado: (2016)

Exploring RNA modifications, editing, and splicing changes in hyperuricemia and gout
por: Huang, Chung-Ming, et al.
Publicado: (2022)

Comparative Microbiome Study of Mummified Peach Fruits by Metagenomics and Metatranscriptomics
por: Jo, Yeonhwa, et al.
Publicado: (2020)

4β-Hydroxywithanolide E Modulates Alternative Splicing of Apoptotic Genes in Human Hepatocellular Carcinoma Huh-7 Cells
por: Lee, Chien-Chin, et al.
Publicado: (2017)

Metagenomic and metatranscriptomic profiling of Lactobacillus casei Zhang in the human gut
por: Wang, Jicheng, et al.
Publicado: (2021)

Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis
por: Aguiar-Pulido, Vanessa, et al.
Publicado: (2016)

Species-level functional profiling of metagenomes and metatranscriptomes
por: Franzosa, Eric A., et al.
Publicado: (2018)

Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood
por: Tláskal, Vojtěch, et al.
Publicado: (2021)

Amplicons, Metagenomes, and Metatranscriptomes from Sediment and Water
por: Newman, Madison R., et al.
Publicado: (2023)

Molecular Classification of Hepatocellular Carcinoma Using Wnt–Hippo Signaling Pathway-Related Genes
por: Chang, Ya-Sian, et al.
Publicado: (2022)

Mutation Analysis of Second Primary Tumors in Oral Cancer in Taiwanese Patients through Next-Generation Sequencing
por: Liu, Ting-Yuan, et al.
Publicado: (2022)

Comparative Study of Metagenomics and Metatranscriptomics to Reveal Microbiomes in Overwintering Pepper Fruits
por: Jo, Yeonhwa, et al.
Publicado: (2021)

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG
por: Mitra, Suparna, et al.
Publicado: (2011)

Metagenome and Metatranscriptome Analyses Using Protein Family Profiles
por: Zhong, Cuncong, et al.
Publicado: (2016)

Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
por: Chuckran, Peter F., et al.
Publicado: (2020)

Metagenomic and metatranscriptomic analysis of human prostate microbiota from patients with prostate cancer
por: Feng, Ye, et al.
Publicado: (2019)

Fast simultaneous detection of K-RAS mutations in colorectal cancer
por: Chang, Ya-Sian, et al.
Publicado: (2009)

Metagenomes, Metagenome-Assembled Genomes, and Metatranscriptomes from Polychlorinated Biphenyl-Contaminated Sediment Microcosms
por: Ewald, Jessica M., et al.
Publicado: (2022)

Long Noncoding RNA NTT Context-Dependently Regulates MYB by Interacting With Activated Complex in Hepatocellular Carcinoma Cells
por: Chang, Ya-Sian, et al.
Publicado: (2021)

Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011
por: Satinsky, Brandon M., et al.
Publicado: (2015)

Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis
por: Ye, Yuzhen, et al.
Publicado: (2016)

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria
por: Martínez, Asunción, et al.
Publicado: (2013)

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
por: Kim, Jiwoong, et al.
Publicado: (2016)

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
por: Nowinski, Brent, et al.
Publicado: (2019)

Relating the gut metagenome and metatranscriptome to immunotherapy responses in melanoma patients
por: Peters, Brandilyn A., et al.
Publicado: (2019)

Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis
por: Xia, Yu, et al.
Publicado: (2014)

Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
por: Ahmed, Mir Alvee, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_o24r9qurdjpgr43mih8fhbqngk