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Identification of Immune Function-Related Subtypes in Cutaneous Melanoma

Tumour immunotherapy combined with molecular typing is a new therapy to help select patients. However, molecular typing algorithms related to tumour immune function have not been thoroughly explored. We herein proposed a single sample immune signature network (SING) method to identify new immune fun...

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Autores principales: Liu, Lin, Zhu, Junkai, Jin, Tong, Huang, Mengjia, Chen, Yi, Xu, Li, Chen, Wenxuan, Jiang, Bo, Yan, Fangrong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8467264/
https://www.ncbi.nlm.nih.gov/pubmed/34575074
http://dx.doi.org/10.3390/life11090925
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author Liu, Lin
Zhu, Junkai
Jin, Tong
Huang, Mengjia
Chen, Yi
Xu, Li
Chen, Wenxuan
Jiang, Bo
Yan, Fangrong
author_facet Liu, Lin
Zhu, Junkai
Jin, Tong
Huang, Mengjia
Chen, Yi
Xu, Li
Chen, Wenxuan
Jiang, Bo
Yan, Fangrong
author_sort Liu, Lin
collection PubMed
description Tumour immunotherapy combined with molecular typing is a new therapy to help select patients. However, molecular typing algorithms related to tumour immune function have not been thoroughly explored. We herein proposed a single sample immune signature network (SING) method to identify new immune function-related subtypes of cutaneous melanoma of the skin. A sample-specific network and tumour microenvironment were constructed based on the immune annotation of cutaneous melanoma samples. Then, the differences and heterogeneity of immune function among different subtypes were analysed and verified. A total of 327 cases of cutaneous melanoma were divided into normal and immune classes; the immune class had more immune enrichment characteristics. After further subdividing the 327 cases into three immune-related subtypes, the degree of immune enrichment in the “high immune subtype” was greater than that in other subtypes. Similar results were validated in both tumour samples and cell lines. Sample-specific networks and the tumour microenvironment based on immune annotation contribute to the mining of cutaneous melanoma immune function-related subtypes. Mutations in B2M and PTEN are considered potential therapeutic targets that can improve the immune response. Patients with a high immune subtype can generally obtain a better immune prognosis effect, and the prognosis may be improved when combined with TGF-β inhibitors.
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spelling pubmed-84672642021-09-27 Identification of Immune Function-Related Subtypes in Cutaneous Melanoma Liu, Lin Zhu, Junkai Jin, Tong Huang, Mengjia Chen, Yi Xu, Li Chen, Wenxuan Jiang, Bo Yan, Fangrong Life (Basel) Article Tumour immunotherapy combined with molecular typing is a new therapy to help select patients. However, molecular typing algorithms related to tumour immune function have not been thoroughly explored. We herein proposed a single sample immune signature network (SING) method to identify new immune function-related subtypes of cutaneous melanoma of the skin. A sample-specific network and tumour microenvironment were constructed based on the immune annotation of cutaneous melanoma samples. Then, the differences and heterogeneity of immune function among different subtypes were analysed and verified. A total of 327 cases of cutaneous melanoma were divided into normal and immune classes; the immune class had more immune enrichment characteristics. After further subdividing the 327 cases into three immune-related subtypes, the degree of immune enrichment in the “high immune subtype” was greater than that in other subtypes. Similar results were validated in both tumour samples and cell lines. Sample-specific networks and the tumour microenvironment based on immune annotation contribute to the mining of cutaneous melanoma immune function-related subtypes. Mutations in B2M and PTEN are considered potential therapeutic targets that can improve the immune response. Patients with a high immune subtype can generally obtain a better immune prognosis effect, and the prognosis may be improved when combined with TGF-β inhibitors. MDPI 2021-09-06 /pmc/articles/PMC8467264/ /pubmed/34575074 http://dx.doi.org/10.3390/life11090925 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Lin
Zhu, Junkai
Jin, Tong
Huang, Mengjia
Chen, Yi
Xu, Li
Chen, Wenxuan
Jiang, Bo
Yan, Fangrong
Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
title Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
title_full Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
title_fullStr Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
title_full_unstemmed Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
title_short Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
title_sort identification of immune function-related subtypes in cutaneous melanoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8467264/
https://www.ncbi.nlm.nih.gov/pubmed/34575074
http://dx.doi.org/10.3390/life11090925
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