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Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis

Solid-state nanopores have been developed as a prominent tool for single molecule analysis in versatile applications. Although controlled dielectric breakdown (CDB) is the most accessible method for a single nanopore fabrication, it is still necessary to improve the fabrication efficiency and avoid...

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Detalles Bibliográficos
Autores principales: Zhang, Yin, Ma, Dexian, Gu, Zengdao, Zhan, Lijian, Sha, Jingjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8468320/
https://www.ncbi.nlm.nih.gov/pubmed/34578767
http://dx.doi.org/10.3390/nano11092450
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author Zhang, Yin
Ma, Dexian
Gu, Zengdao
Zhan, Lijian
Sha, Jingjie
author_facet Zhang, Yin
Ma, Dexian
Gu, Zengdao
Zhan, Lijian
Sha, Jingjie
author_sort Zhang, Yin
collection PubMed
description Solid-state nanopores have been developed as a prominent tool for single molecule analysis in versatile applications. Although controlled dielectric breakdown (CDB) is the most accessible method for a single nanopore fabrication, it is still necessary to improve the fabrication efficiency and avoid the generation of multiple nanopores. In this work, we treated the SiNx membranes in the air–plasma before the CDB process, which shortened the time-to-pore-formation by orders of magnitude. λ-DNA translocation experiments validated the functionality of the pore and substantiated the presence of only a single pore on the membrane. Our fabricated pore could also be successfully used to detect short single-stranded DNA (ssDNA) fragments. Using to ionic current signals, ssDNA fragments with different lengths could be clearly distinguished. These results will provide a valuable reference for the nanopore fabrication and DNA analysis.
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spelling pubmed-84683202021-09-27 Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis Zhang, Yin Ma, Dexian Gu, Zengdao Zhan, Lijian Sha, Jingjie Nanomaterials (Basel) Article Solid-state nanopores have been developed as a prominent tool for single molecule analysis in versatile applications. Although controlled dielectric breakdown (CDB) is the most accessible method for a single nanopore fabrication, it is still necessary to improve the fabrication efficiency and avoid the generation of multiple nanopores. In this work, we treated the SiNx membranes in the air–plasma before the CDB process, which shortened the time-to-pore-formation by orders of magnitude. λ-DNA translocation experiments validated the functionality of the pore and substantiated the presence of only a single pore on the membrane. Our fabricated pore could also be successfully used to detect short single-stranded DNA (ssDNA) fragments. Using to ionic current signals, ssDNA fragments with different lengths could be clearly distinguished. These results will provide a valuable reference for the nanopore fabrication and DNA analysis. MDPI 2021-09-20 /pmc/articles/PMC8468320/ /pubmed/34578767 http://dx.doi.org/10.3390/nano11092450 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Yin
Ma, Dexian
Gu, Zengdao
Zhan, Lijian
Sha, Jingjie
Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis
title Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis
title_full Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis
title_fullStr Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis
title_full_unstemmed Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis
title_short Fast Fabrication of Solid-State Nanopores for DNA Molecule Analysis
title_sort fast fabrication of solid-state nanopores for dna molecule analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8468320/
https://www.ncbi.nlm.nih.gov/pubmed/34578767
http://dx.doi.org/10.3390/nano11092450
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