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Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19

The Ig fold has had a remarkable success in vertebrate evolution, with a presence in over 2% of human genes. The Ig fold is not just the elementary structural domain of antibodies and TCRs, it is also at the heart of a staggering 30% of immunologic cell surface receptors, making it a major orchestra...

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Autor principal: Youkharibache, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8470474/
https://www.ncbi.nlm.nih.gov/pubmed/34572502
http://dx.doi.org/10.3390/biom11091290
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author Youkharibache, Philippe
author_facet Youkharibache, Philippe
author_sort Youkharibache, Philippe
collection PubMed
description The Ig fold has had a remarkable success in vertebrate evolution, with a presence in over 2% of human genes. The Ig fold is not just the elementary structural domain of antibodies and TCRs, it is also at the heart of a staggering 30% of immunologic cell surface receptors, making it a major orchestrator of cell–cell interactions. While BCRs, TCRs, and numerous Ig-based cell surface receptors form homo- or heterodimers on the same cell surface (in cis), many of them interface as ligand-receptors (checkpoints) on interacting cells (in trans) through their Ig domains. New Ig-Ig interfaces are still being discovered between Ig-based cell surface receptors, even in well-known families such as B7. What is largely ignored, however, is that the Ig fold itself is pseudosymmetric, a property that makes the Ig domain a versatile self-associative 3D structure and may, in part, explain its success in evolution, especially through its ability to bind in cis or in trans in the context of cell surface receptor–ligand interactions. In this paper, we review the Ig domains’ tertiary and quaternary pseudosymmetries, with particular attention to the newly identified double Ig fold in the solved CD19 molecular structure to highlight the underlying fundamental folding elements of Ig domains, i.e., Ig protodomains. This pseudosymmetric property of Ig domains gives us a decoding frame of reference to understand the fold, relate all Ig domain forms, single or double, and suggest new protein engineering avenues.
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spelling pubmed-84704742021-09-27 Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19 Youkharibache, Philippe Biomolecules Article The Ig fold has had a remarkable success in vertebrate evolution, with a presence in over 2% of human genes. The Ig fold is not just the elementary structural domain of antibodies and TCRs, it is also at the heart of a staggering 30% of immunologic cell surface receptors, making it a major orchestrator of cell–cell interactions. While BCRs, TCRs, and numerous Ig-based cell surface receptors form homo- or heterodimers on the same cell surface (in cis), many of them interface as ligand-receptors (checkpoints) on interacting cells (in trans) through their Ig domains. New Ig-Ig interfaces are still being discovered between Ig-based cell surface receptors, even in well-known families such as B7. What is largely ignored, however, is that the Ig fold itself is pseudosymmetric, a property that makes the Ig domain a versatile self-associative 3D structure and may, in part, explain its success in evolution, especially through its ability to bind in cis or in trans in the context of cell surface receptor–ligand interactions. In this paper, we review the Ig domains’ tertiary and quaternary pseudosymmetries, with particular attention to the newly identified double Ig fold in the solved CD19 molecular structure to highlight the underlying fundamental folding elements of Ig domains, i.e., Ig protodomains. This pseudosymmetric property of Ig domains gives us a decoding frame of reference to understand the fold, relate all Ig domain forms, single or double, and suggest new protein engineering avenues. MDPI 2021-08-30 /pmc/articles/PMC8470474/ /pubmed/34572502 http://dx.doi.org/10.3390/biom11091290 Text en © 2021 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Youkharibache, Philippe
Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
title Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
title_full Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
title_fullStr Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
title_full_unstemmed Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
title_short Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
title_sort topological and structural plasticity of the single ig fold and the double ig fold present in cd19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8470474/
https://www.ncbi.nlm.nih.gov/pubmed/34572502
http://dx.doi.org/10.3390/biom11091290
work_keys_str_mv AT youkharibachephilippe topologicalandstructuralplasticityofthesingleigfoldandthedoubleigfoldpresentincd19