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Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans

We investigated the association of the single nucleotide polymorphism (SNP) rs112369934 near the TRIM66 gene with qualitative and quantitative phenotypes of primary open-angle glaucoma (POAG) in African Americans (AA). AA subjects over 35 years old were recruited for the Primary Open-Angle African A...

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Autores principales: Kim, Claire D., Gudiseva, Harini V., McGeehan, Brendan, Daniel, Ebenezer, Ying, Gui Shuang, Chavali, Venkata R. M., O’Brien, Joan M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8471280/
https://www.ncbi.nlm.nih.gov/pubmed/34573402
http://dx.doi.org/10.3390/genes12091420
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author Kim, Claire D.
Gudiseva, Harini V.
McGeehan, Brendan
Daniel, Ebenezer
Ying, Gui Shuang
Chavali, Venkata R. M.
O’Brien, Joan M.
author_facet Kim, Claire D.
Gudiseva, Harini V.
McGeehan, Brendan
Daniel, Ebenezer
Ying, Gui Shuang
Chavali, Venkata R. M.
O’Brien, Joan M.
author_sort Kim, Claire D.
collection PubMed
description We investigated the association of the single nucleotide polymorphism (SNP) rs112369934 near the TRIM66 gene with qualitative and quantitative phenotypes of primary open-angle glaucoma (POAG) in African Americans (AA). AA subjects over 35 years old were recruited for the Primary Open-Angle African American Glaucoma Genetics (POAAGG) study in Philadelphia, PA. Glaucoma cases were evaluated for phenotypes associated with POAG pathogenesis, and the associations between rs112369934 and phenotypes were investigated by logistic regression analysis and in gender-stratified case cohorts: The SNP rs112369934 was found to have a suggestive association with retinal nerve fiber layer (RNFL) thickness and cup-to-disc ratio (CDR) in 1087 male AA POAG cases, individuals with the TC genotype having thinner RNFL (95% CI 0.85 to 6.61, p = 0.01) and larger CDR (95% CI −0.07 to −0.01, p = 0.02) than those with wildtype TT. No other significant associations were found. In conclusion SNP rs112369934 may play a role in POAG pathogenesis in male AA individuals. However, this SNP has been implicated in higher POAG risk in both male and female AA POAG cases.
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spelling pubmed-84712802021-09-27 Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans Kim, Claire D. Gudiseva, Harini V. McGeehan, Brendan Daniel, Ebenezer Ying, Gui Shuang Chavali, Venkata R. M. O’Brien, Joan M. Genes (Basel) Article We investigated the association of the single nucleotide polymorphism (SNP) rs112369934 near the TRIM66 gene with qualitative and quantitative phenotypes of primary open-angle glaucoma (POAG) in African Americans (AA). AA subjects over 35 years old were recruited for the Primary Open-Angle African American Glaucoma Genetics (POAAGG) study in Philadelphia, PA. Glaucoma cases were evaluated for phenotypes associated with POAG pathogenesis, and the associations between rs112369934 and phenotypes were investigated by logistic regression analysis and in gender-stratified case cohorts: The SNP rs112369934 was found to have a suggestive association with retinal nerve fiber layer (RNFL) thickness and cup-to-disc ratio (CDR) in 1087 male AA POAG cases, individuals with the TC genotype having thinner RNFL (95% CI 0.85 to 6.61, p = 0.01) and larger CDR (95% CI −0.07 to −0.01, p = 0.02) than those with wildtype TT. No other significant associations were found. In conclusion SNP rs112369934 may play a role in POAG pathogenesis in male AA individuals. However, this SNP has been implicated in higher POAG risk in both male and female AA POAG cases. MDPI 2021-09-15 /pmc/articles/PMC8471280/ /pubmed/34573402 http://dx.doi.org/10.3390/genes12091420 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Claire D.
Gudiseva, Harini V.
McGeehan, Brendan
Daniel, Ebenezer
Ying, Gui Shuang
Chavali, Venkata R. M.
O’Brien, Joan M.
Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans
title Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans
title_full Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans
title_fullStr Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans
title_full_unstemmed Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans
title_short Association of the SNP rs112369934 near TRIM66 Gene with POAG Endophenotypes in African Americans
title_sort association of the snp rs112369934 near trim66 gene with poag endophenotypes in african americans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8471280/
https://www.ncbi.nlm.nih.gov/pubmed/34573402
http://dx.doi.org/10.3390/genes12091420
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