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Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach

Chlamydomonas reinhardtii has many attractive features for use as a model organism for both fundamental studies and as a biotechnological platform. Nonetheless, despite the many molecular tools and resources that have been developed, there are challenges for its successful engineering, in particular...

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Autores principales: Geisler, Katrin, Scaife, Mark A., Mordaka, Paweł M., Holzer, Andre, Tomsett, Eleanor V., Mehrshahi, Payam, Mendoza Ochoa, Gonzalo I., Smith, Alison G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8471596/
https://www.ncbi.nlm.nih.gov/pubmed/34575113
http://dx.doi.org/10.3390/life11090964
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author Geisler, Katrin
Scaife, Mark A.
Mordaka, Paweł M.
Holzer, Andre
Tomsett, Eleanor V.
Mehrshahi, Payam
Mendoza Ochoa, Gonzalo I.
Smith, Alison G.
author_facet Geisler, Katrin
Scaife, Mark A.
Mordaka, Paweł M.
Holzer, Andre
Tomsett, Eleanor V.
Mehrshahi, Payam
Mendoza Ochoa, Gonzalo I.
Smith, Alison G.
author_sort Geisler, Katrin
collection PubMed
description Chlamydomonas reinhardtii has many attractive features for use as a model organism for both fundamental studies and as a biotechnological platform. Nonetheless, despite the many molecular tools and resources that have been developed, there are challenges for its successful engineering, in particular to obtain reproducible and high levels of transgene expression. Here we describe a synthetic biology approach to screen several hundred independent transformants using standardised parts to explore different parameters that might affect transgene expression. We focused on terminators and, using a standardised workflow and quantitative outputs, tested 9 different elements representing three different size classes of native terminators to determine their ability to support high level expression of a GFP reporter gene. We found that the optimal size reflected the median size of element found in the C. reinhardtii genome. The behaviour of the terminator parts was similar with different promoters, in different host strains and with different transgenes. This approach is applicable to the systematic testing of other genetic elements, facilitating comparison to determine optimal transgene design.
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spelling pubmed-84715962021-09-28 Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach Geisler, Katrin Scaife, Mark A. Mordaka, Paweł M. Holzer, Andre Tomsett, Eleanor V. Mehrshahi, Payam Mendoza Ochoa, Gonzalo I. Smith, Alison G. Life (Basel) Article Chlamydomonas reinhardtii has many attractive features for use as a model organism for both fundamental studies and as a biotechnological platform. Nonetheless, despite the many molecular tools and resources that have been developed, there are challenges for its successful engineering, in particular to obtain reproducible and high levels of transgene expression. Here we describe a synthetic biology approach to screen several hundred independent transformants using standardised parts to explore different parameters that might affect transgene expression. We focused on terminators and, using a standardised workflow and quantitative outputs, tested 9 different elements representing three different size classes of native terminators to determine their ability to support high level expression of a GFP reporter gene. We found that the optimal size reflected the median size of element found in the C. reinhardtii genome. The behaviour of the terminator parts was similar with different promoters, in different host strains and with different transgenes. This approach is applicable to the systematic testing of other genetic elements, facilitating comparison to determine optimal transgene design. MDPI 2021-09-14 /pmc/articles/PMC8471596/ /pubmed/34575113 http://dx.doi.org/10.3390/life11090964 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Geisler, Katrin
Scaife, Mark A.
Mordaka, Paweł M.
Holzer, Andre
Tomsett, Eleanor V.
Mehrshahi, Payam
Mendoza Ochoa, Gonzalo I.
Smith, Alison G.
Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach
title Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach
title_full Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach
title_fullStr Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach
title_full_unstemmed Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach
title_short Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach
title_sort exploring the impact of terminators on transgene expression in chlamydomonas reinhardtii with a synthetic biology approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8471596/
https://www.ncbi.nlm.nih.gov/pubmed/34575113
http://dx.doi.org/10.3390/life11090964
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