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Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods

Radiomics converts medical images into mineable data via a high-throughput extraction of quantitative features used for clinical decision support. However, these radiomic features are susceptible to variation across scanners, acquisition protocols, and reconstruction settings. Various investigations...

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Autores principales: Mali, Shruti Atul, Ibrahim, Abdalla, Woodruff, Henry C., Andrearczyk, Vincent, Müller, Henning, Primakov, Sergey, Salahuddin, Zohaib, Chatterjee, Avishek, Lambin, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8472571/
https://www.ncbi.nlm.nih.gov/pubmed/34575619
http://dx.doi.org/10.3390/jpm11090842
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author Mali, Shruti Atul
Ibrahim, Abdalla
Woodruff, Henry C.
Andrearczyk, Vincent
Müller, Henning
Primakov, Sergey
Salahuddin, Zohaib
Chatterjee, Avishek
Lambin, Philippe
author_facet Mali, Shruti Atul
Ibrahim, Abdalla
Woodruff, Henry C.
Andrearczyk, Vincent
Müller, Henning
Primakov, Sergey
Salahuddin, Zohaib
Chatterjee, Avishek
Lambin, Philippe
author_sort Mali, Shruti Atul
collection PubMed
description Radiomics converts medical images into mineable data via a high-throughput extraction of quantitative features used for clinical decision support. However, these radiomic features are susceptible to variation across scanners, acquisition protocols, and reconstruction settings. Various investigations have assessed the reproducibility and validation of radiomic features across these discrepancies. In this narrative review, we combine systematic keyword searches with prior domain knowledge to discuss various harmonization solutions to make the radiomic features more reproducible across various scanners and protocol settings. Different harmonization solutions are discussed and divided into two main categories: image domain and feature domain. The image domain category comprises methods such as the standardization of image acquisition, post-processing of raw sensor-level image data, data augmentation techniques, and style transfer. The feature domain category consists of methods such as the identification of reproducible features and normalization techniques such as statistical normalization, intensity harmonization, ComBat and its derivatives, and normalization using deep learning. We also reflect upon the importance of deep learning solutions for addressing variability across multi-centric radiomic studies especially using generative adversarial networks (GANs), neural style transfer (NST) techniques, or a combination of both. We cover a broader range of methods especially GANs and NST methods in more detail than previous reviews.
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spelling pubmed-84725712021-09-28 Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods Mali, Shruti Atul Ibrahim, Abdalla Woodruff, Henry C. Andrearczyk, Vincent Müller, Henning Primakov, Sergey Salahuddin, Zohaib Chatterjee, Avishek Lambin, Philippe J Pers Med Review Radiomics converts medical images into mineable data via a high-throughput extraction of quantitative features used for clinical decision support. However, these radiomic features are susceptible to variation across scanners, acquisition protocols, and reconstruction settings. Various investigations have assessed the reproducibility and validation of radiomic features across these discrepancies. In this narrative review, we combine systematic keyword searches with prior domain knowledge to discuss various harmonization solutions to make the radiomic features more reproducible across various scanners and protocol settings. Different harmonization solutions are discussed and divided into two main categories: image domain and feature domain. The image domain category comprises methods such as the standardization of image acquisition, post-processing of raw sensor-level image data, data augmentation techniques, and style transfer. The feature domain category consists of methods such as the identification of reproducible features and normalization techniques such as statistical normalization, intensity harmonization, ComBat and its derivatives, and normalization using deep learning. We also reflect upon the importance of deep learning solutions for addressing variability across multi-centric radiomic studies especially using generative adversarial networks (GANs), neural style transfer (NST) techniques, or a combination of both. We cover a broader range of methods especially GANs and NST methods in more detail than previous reviews. MDPI 2021-08-27 /pmc/articles/PMC8472571/ /pubmed/34575619 http://dx.doi.org/10.3390/jpm11090842 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Mali, Shruti Atul
Ibrahim, Abdalla
Woodruff, Henry C.
Andrearczyk, Vincent
Müller, Henning
Primakov, Sergey
Salahuddin, Zohaib
Chatterjee, Avishek
Lambin, Philippe
Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
title Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
title_full Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
title_fullStr Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
title_full_unstemmed Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
title_short Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
title_sort making radiomics more reproducible across scanner and imaging protocol variations: a review of harmonization methods
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8472571/
https://www.ncbi.nlm.nih.gov/pubmed/34575619
http://dx.doi.org/10.3390/jpm11090842
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