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Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods
Radiomics converts medical images into mineable data via a high-throughput extraction of quantitative features used for clinical decision support. However, these radiomic features are susceptible to variation across scanners, acquisition protocols, and reconstruction settings. Various investigations...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8472571/ https://www.ncbi.nlm.nih.gov/pubmed/34575619 http://dx.doi.org/10.3390/jpm11090842 |
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author | Mali, Shruti Atul Ibrahim, Abdalla Woodruff, Henry C. Andrearczyk, Vincent Müller, Henning Primakov, Sergey Salahuddin, Zohaib Chatterjee, Avishek Lambin, Philippe |
author_facet | Mali, Shruti Atul Ibrahim, Abdalla Woodruff, Henry C. Andrearczyk, Vincent Müller, Henning Primakov, Sergey Salahuddin, Zohaib Chatterjee, Avishek Lambin, Philippe |
author_sort | Mali, Shruti Atul |
collection | PubMed |
description | Radiomics converts medical images into mineable data via a high-throughput extraction of quantitative features used for clinical decision support. However, these radiomic features are susceptible to variation across scanners, acquisition protocols, and reconstruction settings. Various investigations have assessed the reproducibility and validation of radiomic features across these discrepancies. In this narrative review, we combine systematic keyword searches with prior domain knowledge to discuss various harmonization solutions to make the radiomic features more reproducible across various scanners and protocol settings. Different harmonization solutions are discussed and divided into two main categories: image domain and feature domain. The image domain category comprises methods such as the standardization of image acquisition, post-processing of raw sensor-level image data, data augmentation techniques, and style transfer. The feature domain category consists of methods such as the identification of reproducible features and normalization techniques such as statistical normalization, intensity harmonization, ComBat and its derivatives, and normalization using deep learning. We also reflect upon the importance of deep learning solutions for addressing variability across multi-centric radiomic studies especially using generative adversarial networks (GANs), neural style transfer (NST) techniques, or a combination of both. We cover a broader range of methods especially GANs and NST methods in more detail than previous reviews. |
format | Online Article Text |
id | pubmed-8472571 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-84725712021-09-28 Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods Mali, Shruti Atul Ibrahim, Abdalla Woodruff, Henry C. Andrearczyk, Vincent Müller, Henning Primakov, Sergey Salahuddin, Zohaib Chatterjee, Avishek Lambin, Philippe J Pers Med Review Radiomics converts medical images into mineable data via a high-throughput extraction of quantitative features used for clinical decision support. However, these radiomic features are susceptible to variation across scanners, acquisition protocols, and reconstruction settings. Various investigations have assessed the reproducibility and validation of radiomic features across these discrepancies. In this narrative review, we combine systematic keyword searches with prior domain knowledge to discuss various harmonization solutions to make the radiomic features more reproducible across various scanners and protocol settings. Different harmonization solutions are discussed and divided into two main categories: image domain and feature domain. The image domain category comprises methods such as the standardization of image acquisition, post-processing of raw sensor-level image data, data augmentation techniques, and style transfer. The feature domain category consists of methods such as the identification of reproducible features and normalization techniques such as statistical normalization, intensity harmonization, ComBat and its derivatives, and normalization using deep learning. We also reflect upon the importance of deep learning solutions for addressing variability across multi-centric radiomic studies especially using generative adversarial networks (GANs), neural style transfer (NST) techniques, or a combination of both. We cover a broader range of methods especially GANs and NST methods in more detail than previous reviews. MDPI 2021-08-27 /pmc/articles/PMC8472571/ /pubmed/34575619 http://dx.doi.org/10.3390/jpm11090842 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Mali, Shruti Atul Ibrahim, Abdalla Woodruff, Henry C. Andrearczyk, Vincent Müller, Henning Primakov, Sergey Salahuddin, Zohaib Chatterjee, Avishek Lambin, Philippe Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods |
title | Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods |
title_full | Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods |
title_fullStr | Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods |
title_full_unstemmed | Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods |
title_short | Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods |
title_sort | making radiomics more reproducible across scanner and imaging protocol variations: a review of harmonization methods |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8472571/ https://www.ncbi.nlm.nih.gov/pubmed/34575619 http://dx.doi.org/10.3390/jpm11090842 |
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