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Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation

This research uses machine-learned computational analyses to predict the cognitive performance impairment of rats induced by irradiation. The experimental data in the analyses is from a rodent model exposed to ≤15 cGy of individual galactic cosmic radiation (GCR) ions: (4)He, (16)O, (28)Si, (48)Ti,...

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Autores principales: Matar, Mona, Gokoglu, Suleyman A., Prelich, Matthew T., Gallo, Christopher A., Iqbal, Asad K., Britten, Richard A., Prabhu, R. K., Myers, Jerry G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8473791/
https://www.ncbi.nlm.nih.gov/pubmed/34588962
http://dx.doi.org/10.3389/fnsys.2021.713131
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author Matar, Mona
Gokoglu, Suleyman A.
Prelich, Matthew T.
Gallo, Christopher A.
Iqbal, Asad K.
Britten, Richard A.
Prabhu, R. K.
Myers, Jerry G.
author_facet Matar, Mona
Gokoglu, Suleyman A.
Prelich, Matthew T.
Gallo, Christopher A.
Iqbal, Asad K.
Britten, Richard A.
Prabhu, R. K.
Myers, Jerry G.
author_sort Matar, Mona
collection PubMed
description This research uses machine-learned computational analyses to predict the cognitive performance impairment of rats induced by irradiation. The experimental data in the analyses is from a rodent model exposed to ≤15 cGy of individual galactic cosmic radiation (GCR) ions: (4)He, (16)O, (28)Si, (48)Ti, or (56)Fe, expected for a Lunar or Mars mission. This work investigates rats at a subject-based level and uses performance scores taken before irradiation to predict impairment in attentional set-shifting (ATSET) data post-irradiation. Here, the worst performing rats of the control group define the impairment thresholds based on population analyses via cumulative distribution functions, leading to the labeling of impairment for each subject. A significant finding is the exhibition of a dose-dependent increasing probability of impairment for 1 to 10 cGy of (28)Si or (56)Fe in the simple discrimination (SD) stage of the ATSET, and for 1 to 10 cGy of (56)Fe in the compound discrimination (CD) stage. On a subject-based level, implementing machine learning (ML) classifiers such as the Gaussian naïve Bayes, support vector machine, and artificial neural networks identifies rats that have a higher tendency for impairment after GCR exposure. The algorithms employ the experimental prescreen performance scores as multidimensional input features to predict each rodent’s susceptibility to cognitive impairment due to space radiation exposure. The receiver operating characteristic and the precision-recall curves of the ML models show a better prediction of impairment when (56)Fe is the ion in question in both SD and CD stages. They, however, do not depict impairment due to (4)He in SD and (28)Si in CD, suggesting no dose-dependent impairment response in these cases. One key finding of our study is that prescreen performance scores can be used to predict the ATSET performance impairments. This result is significant to crewed space missions as it supports the potential of predicting an astronaut’s impairment in a specific task before spaceflight through the implementation of appropriately trained ML tools. Future research can focus on constructing ML ensemble methods to integrate the findings from the methodologies implemented in this study for more robust predictions of cognitive decrements due to space radiation exposure.
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spelling pubmed-84737912021-09-28 Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation Matar, Mona Gokoglu, Suleyman A. Prelich, Matthew T. Gallo, Christopher A. Iqbal, Asad K. Britten, Richard A. Prabhu, R. K. Myers, Jerry G. Front Syst Neurosci Neuroscience This research uses machine-learned computational analyses to predict the cognitive performance impairment of rats induced by irradiation. The experimental data in the analyses is from a rodent model exposed to ≤15 cGy of individual galactic cosmic radiation (GCR) ions: (4)He, (16)O, (28)Si, (48)Ti, or (56)Fe, expected for a Lunar or Mars mission. This work investigates rats at a subject-based level and uses performance scores taken before irradiation to predict impairment in attentional set-shifting (ATSET) data post-irradiation. Here, the worst performing rats of the control group define the impairment thresholds based on population analyses via cumulative distribution functions, leading to the labeling of impairment for each subject. A significant finding is the exhibition of a dose-dependent increasing probability of impairment for 1 to 10 cGy of (28)Si or (56)Fe in the simple discrimination (SD) stage of the ATSET, and for 1 to 10 cGy of (56)Fe in the compound discrimination (CD) stage. On a subject-based level, implementing machine learning (ML) classifiers such as the Gaussian naïve Bayes, support vector machine, and artificial neural networks identifies rats that have a higher tendency for impairment after GCR exposure. The algorithms employ the experimental prescreen performance scores as multidimensional input features to predict each rodent’s susceptibility to cognitive impairment due to space radiation exposure. The receiver operating characteristic and the precision-recall curves of the ML models show a better prediction of impairment when (56)Fe is the ion in question in both SD and CD stages. They, however, do not depict impairment due to (4)He in SD and (28)Si in CD, suggesting no dose-dependent impairment response in these cases. One key finding of our study is that prescreen performance scores can be used to predict the ATSET performance impairments. This result is significant to crewed space missions as it supports the potential of predicting an astronaut’s impairment in a specific task before spaceflight through the implementation of appropriately trained ML tools. Future research can focus on constructing ML ensemble methods to integrate the findings from the methodologies implemented in this study for more robust predictions of cognitive decrements due to space radiation exposure. Frontiers Media S.A. 2021-09-13 /pmc/articles/PMC8473791/ /pubmed/34588962 http://dx.doi.org/10.3389/fnsys.2021.713131 Text en Copyright © 2021 Matar, Gokoglu, Prelich, Gallo, Iqbal, Britten, Prabhu and Myers. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Matar, Mona
Gokoglu, Suleyman A.
Prelich, Matthew T.
Gallo, Christopher A.
Iqbal, Asad K.
Britten, Richard A.
Prabhu, R. K.
Myers, Jerry G.
Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation
title Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation
title_full Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation
title_fullStr Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation
title_full_unstemmed Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation
title_short Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation
title_sort machine learning models to predict cognitive impairment of rodents subjected to space radiation
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8473791/
https://www.ncbi.nlm.nih.gov/pubmed/34588962
http://dx.doi.org/10.3389/fnsys.2021.713131
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