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Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation

OBJECTIVE: It is well known that circRNAs are closely involved in the progression of various diseases. However, their functions and potential regulatory mechanisms in polycystic ovary syndrome (PCOS) remain largely unknown. In the present study, our aim was to investigate the potential diagnostic va...

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Autores principales: Huang, Pengyu, Du, Shengrong, Lin, Yunhong, Huang, Zhiqing, Li, Haiyan, Chen, Gangxin, Chen, Suzhu, Chen, Qingfen, Da, Lincui, Shi, Hang, Wei, Wei, Yang, Lei, Sun, Yan, Zheng, Beihong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8473987/
https://www.ncbi.nlm.nih.gov/pubmed/34588800
http://dx.doi.org/10.2147/IJGM.S324126
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author Huang, Pengyu
Du, Shengrong
Lin, Yunhong
Huang, Zhiqing
Li, Haiyan
Chen, Gangxin
Chen, Suzhu
Chen, Qingfen
Da, Lincui
Shi, Hang
Wei, Wei
Yang, Lei
Sun, Yan
Zheng, Beihong
author_facet Huang, Pengyu
Du, Shengrong
Lin, Yunhong
Huang, Zhiqing
Li, Haiyan
Chen, Gangxin
Chen, Suzhu
Chen, Qingfen
Da, Lincui
Shi, Hang
Wei, Wei
Yang, Lei
Sun, Yan
Zheng, Beihong
author_sort Huang, Pengyu
collection PubMed
description OBJECTIVE: It is well known that circRNAs are closely involved in the progression of various diseases. However, their functions and potential regulatory mechanisms in polycystic ovary syndrome (PCOS) remain largely unknown. In the present study, our aim was to investigate the potential diagnostic value of circRNAs in PCOS. METHODS: The circRNA dataset GSE145296, mRNA dataset GSE155489 and miRNA GSE138572 were downloaded from Gene Expression Omnibus (GEO) database. Then, differentially expressed genes (DEGs) were identified. Based on the potential interactions, a network of cirRNA-related competing endogenous RNAs (ceRNAs) was constructed. Biological functions were predicted by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. For further validation, qRT-PCR method was used to detect the expression level of the candidate circRNAs. Then, receiver operating characteristics (ROC) were constructed to evaluate the diagnostic value of the three differentially expressed circRNA (DE-circRNA). RESULTS: We constructed a network of cirRNA-related ceRNA network. Hsa_circ_0075691, hsa_circ_0075692 and hsa_circ_0085997 were validate to be dysregulated in PCOS. CONCLUSION: Hsa_circ_0075691, hsa_circ_0075692 and hsa_circ_0085997 may be potential diagnostic biomarkers of PCOS, but their specific regulatory mechanisms still need to be further studied.
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spelling pubmed-84739872021-09-28 Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation Huang, Pengyu Du, Shengrong Lin, Yunhong Huang, Zhiqing Li, Haiyan Chen, Gangxin Chen, Suzhu Chen, Qingfen Da, Lincui Shi, Hang Wei, Wei Yang, Lei Sun, Yan Zheng, Beihong Int J Gen Med Original Research OBJECTIVE: It is well known that circRNAs are closely involved in the progression of various diseases. However, their functions and potential regulatory mechanisms in polycystic ovary syndrome (PCOS) remain largely unknown. In the present study, our aim was to investigate the potential diagnostic value of circRNAs in PCOS. METHODS: The circRNA dataset GSE145296, mRNA dataset GSE155489 and miRNA GSE138572 were downloaded from Gene Expression Omnibus (GEO) database. Then, differentially expressed genes (DEGs) were identified. Based on the potential interactions, a network of cirRNA-related competing endogenous RNAs (ceRNAs) was constructed. Biological functions were predicted by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. For further validation, qRT-PCR method was used to detect the expression level of the candidate circRNAs. Then, receiver operating characteristics (ROC) were constructed to evaluate the diagnostic value of the three differentially expressed circRNA (DE-circRNA). RESULTS: We constructed a network of cirRNA-related ceRNA network. Hsa_circ_0075691, hsa_circ_0075692 and hsa_circ_0085997 were validate to be dysregulated in PCOS. CONCLUSION: Hsa_circ_0075691, hsa_circ_0075692 and hsa_circ_0085997 may be potential diagnostic biomarkers of PCOS, but their specific regulatory mechanisms still need to be further studied. Dove 2021-09-22 /pmc/articles/PMC8473987/ /pubmed/34588800 http://dx.doi.org/10.2147/IJGM.S324126 Text en © 2021 Huang et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Huang, Pengyu
Du, Shengrong
Lin, Yunhong
Huang, Zhiqing
Li, Haiyan
Chen, Gangxin
Chen, Suzhu
Chen, Qingfen
Da, Lincui
Shi, Hang
Wei, Wei
Yang, Lei
Sun, Yan
Zheng, Beihong
Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation
title Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation
title_full Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation
title_fullStr Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation
title_full_unstemmed Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation
title_short Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation
title_sort identification of three potential circrna biomarkers of polycystic ovary syndrome by bioinformatics analysis and validation
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8473987/
https://www.ncbi.nlm.nih.gov/pubmed/34588800
http://dx.doi.org/10.2147/IJGM.S324126
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