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Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress

Naringin (NG), as the most abundant component of Drynariae Rhizoma (Chinese name: Gusuibu), has been proved to be an antioxidant flavonoid on promoting osteoporotic fracture (OF) healing, but relevant research is scanty on the underlying mechanisms. We adopted target prediction, protein-protein inte...

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Autores principales: Yu, Xiang, Zhang, Peng, Tang, Kai, Shen, Gengyang, Chen, Honglin, Zhang, Zhida, Zhao, Wenhua, Shang, Qi, Zhu, Guangye, Tan, Riwei, Gan, Yanchi, Zhang, You, Liang, De, Ren, Hui, Jiang, Xiaobing, Zhou, Bengen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8476256/
https://www.ncbi.nlm.nih.gov/pubmed/34589132
http://dx.doi.org/10.1155/2021/6421122
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author Yu, Xiang
Zhang, Peng
Tang, Kai
Shen, Gengyang
Chen, Honglin
Zhang, Zhida
Zhao, Wenhua
Shang, Qi
Zhu, Guangye
Tan, Riwei
Gan, Yanchi
Zhang, You
Liang, De
Ren, Hui
Jiang, Xiaobing
Zhou, Bengen
author_facet Yu, Xiang
Zhang, Peng
Tang, Kai
Shen, Gengyang
Chen, Honglin
Zhang, Zhida
Zhao, Wenhua
Shang, Qi
Zhu, Guangye
Tan, Riwei
Gan, Yanchi
Zhang, You
Liang, De
Ren, Hui
Jiang, Xiaobing
Zhou, Bengen
author_sort Yu, Xiang
collection PubMed
description Naringin (NG), as the most abundant component of Drynariae Rhizoma (Chinese name: Gusuibu), has been proved to be an antioxidant flavonoid on promoting osteoporotic fracture (OF) healing, but relevant research is scanty on the underlying mechanisms. We adopted target prediction, protein-protein interaction (PPI) analysis, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and molecular docking to establish a system pharmacology database of NG against OF. Totally 105 targets of naringin were obtained, including 26 common targets with OF. A total of 415 entries were obtained through GO Biological Process enrichment analysis (P < 0.05), and 37 entries were obtained through KEGG pathway enrichment analysis with seven signaling pathways included (P < 0.05), which were primarily concerned with p53, IL-17, TNF, estrogen, and PPAR signaling pathways. According to the results of molecular docking, naringin is all bound in the active pockets of the core targets with 3–9 hydrogen bonds through some connections such as hydrophobic interactions, Pi-Pi stacked interactions, and salt bridge, demonstrating that naringin binds tightly to the core targets. In general, naringin may treat OF through multiple targets and multiple pathways via regulating oxidative stress, etc. Notably, it is first reported that NG may regulate osteoclast differentiation and oxidative stress through the expression of the core targets so as to treat OF.
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spelling pubmed-84762562021-09-28 Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress Yu, Xiang Zhang, Peng Tang, Kai Shen, Gengyang Chen, Honglin Zhang, Zhida Zhao, Wenhua Shang, Qi Zhu, Guangye Tan, Riwei Gan, Yanchi Zhang, You Liang, De Ren, Hui Jiang, Xiaobing Zhou, Bengen Evid Based Complement Alternat Med Research Article Naringin (NG), as the most abundant component of Drynariae Rhizoma (Chinese name: Gusuibu), has been proved to be an antioxidant flavonoid on promoting osteoporotic fracture (OF) healing, but relevant research is scanty on the underlying mechanisms. We adopted target prediction, protein-protein interaction (PPI) analysis, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and molecular docking to establish a system pharmacology database of NG against OF. Totally 105 targets of naringin were obtained, including 26 common targets with OF. A total of 415 entries were obtained through GO Biological Process enrichment analysis (P < 0.05), and 37 entries were obtained through KEGG pathway enrichment analysis with seven signaling pathways included (P < 0.05), which were primarily concerned with p53, IL-17, TNF, estrogen, and PPAR signaling pathways. According to the results of molecular docking, naringin is all bound in the active pockets of the core targets with 3–9 hydrogen bonds through some connections such as hydrophobic interactions, Pi-Pi stacked interactions, and salt bridge, demonstrating that naringin binds tightly to the core targets. In general, naringin may treat OF through multiple targets and multiple pathways via regulating oxidative stress, etc. Notably, it is first reported that NG may regulate osteoclast differentiation and oxidative stress through the expression of the core targets so as to treat OF. Hindawi 2021-09-20 /pmc/articles/PMC8476256/ /pubmed/34589132 http://dx.doi.org/10.1155/2021/6421122 Text en Copyright © 2021 Xiang Yu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Yu, Xiang
Zhang, Peng
Tang, Kai
Shen, Gengyang
Chen, Honglin
Zhang, Zhida
Zhao, Wenhua
Shang, Qi
Zhu, Guangye
Tan, Riwei
Gan, Yanchi
Zhang, You
Liang, De
Ren, Hui
Jiang, Xiaobing
Zhou, Bengen
Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress
title Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress
title_full Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress
title_fullStr Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress
title_full_unstemmed Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress
title_short Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress
title_sort network pharmacology integrated with molecular docking explores the mechanisms of naringin against osteoporotic fracture by regulating oxidative stress
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8476256/
https://www.ncbi.nlm.nih.gov/pubmed/34589132
http://dx.doi.org/10.1155/2021/6421122
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