Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China

Salix chienii W.C. Cheng (Salicaceae) is a dioecious small tree with high economic and medicinal value. In this study, we reported the complete chloroplast DNA (cpDNA) of S. chienii by employing HiSeq sequencing and de novo assembly. The chloroplast genome of S. chienii is 155,672 bp in length, with...

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Detalles Bibliográficos
Autores principales: Wang, Weiyu, Li, Xiaoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8477920/
https://www.ncbi.nlm.nih.gov/pubmed/34595346
http://dx.doi.org/10.1080/23802359.2021.1981170
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author Wang, Weiyu
Li, Xiaoping
author_facet Wang, Weiyu
Li, Xiaoping
author_sort Wang, Weiyu
collection PubMed
description Salix chienii W.C. Cheng (Salicaceae) is a dioecious small tree with high economic and medicinal value. In this study, we reported the complete chloroplast DNA (cpDNA) of S. chienii by employing HiSeq sequencing and de novo assembly. The chloroplast genome of S. chienii is 155,672 bp in length, with a 36.60% GC content; it contains one large single copy (LSC), one small single copy (SSC) and two inverted repeat (IR) regions with lengths of 84,494, 16,330, and 27,424 bp, respectively. A total of 132 genes were predicted, including 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes and 2 pseudogenes. A maximum-likelihood phylogenetic tree showed that S. chienii is closely related to S. wilsonii and S. triandra.
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spelling pubmed-84779202021-09-29 Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China Wang, Weiyu Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement Salix chienii W.C. Cheng (Salicaceae) is a dioecious small tree with high economic and medicinal value. In this study, we reported the complete chloroplast DNA (cpDNA) of S. chienii by employing HiSeq sequencing and de novo assembly. The chloroplast genome of S. chienii is 155,672 bp in length, with a 36.60% GC content; it contains one large single copy (LSC), one small single copy (SSC) and two inverted repeat (IR) regions with lengths of 84,494, 16,330, and 27,424 bp, respectively. A total of 132 genes were predicted, including 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes and 2 pseudogenes. A maximum-likelihood phylogenetic tree showed that S. chienii is closely related to S. wilsonii and S. triandra. Taylor & Francis 2021-09-27 /pmc/articles/PMC8477920/ /pubmed/34595346 http://dx.doi.org/10.1080/23802359.2021.1981170 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Weiyu
Li, Xiaoping
Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China
title Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China
title_full Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China
title_fullStr Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China
title_full_unstemmed Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China
title_short Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China
title_sort characterization of the complete chloroplast genome of salix chienii w.c. cheng (salicaceae) from southern china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8477920/
https://www.ncbi.nlm.nih.gov/pubmed/34595346
http://dx.doi.org/10.1080/23802359.2021.1981170
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