The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China

Smilax glabra is a perennial woody scandent shrub, of which the dried aerial tuber has been used as Chinese medicine. Here, we sequenced S. glabra and assembled its complete chloroplast (cp) genome. The genome is 157,889 bp in length and has a typical quadripartite structure. We annotated 131 genes,...

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Detalles Bibliográficos
Autores principales: Zhang, Yi, Liu, Ying, Ge, Qijin, Han, Kai, Shi, Chengcheng, Liu, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8477935/
https://www.ncbi.nlm.nih.gov/pubmed/34595338
http://dx.doi.org/10.1080/23802359.2021.1979431
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author Zhang, Yi
Liu, Ying
Ge, Qijin
Han, Kai
Shi, Chengcheng
Liu, Xin
author_facet Zhang, Yi
Liu, Ying
Ge, Qijin
Han, Kai
Shi, Chengcheng
Liu, Xin
author_sort Zhang, Yi
collection PubMed
description Smilax glabra is a perennial woody scandent shrub, of which the dried aerial tuber has been used as Chinese medicine. Here, we sequenced S. glabra and assembled its complete chloroplast (cp) genome. The genome is 157,889 bp in length and has a typical quadripartite structure. We annotated 131 genes, of which 84 were protein-coding genes, 37 were tRNAs and 8 were rRNA genes. Phylogenetic analysis of this genome with 26 representatives Liliales fully resolved S. glabra in a clade with S. china. The phylogenetic tree we constructed is largely consistent with recently published phylogenetic trees using both complete chloroplast genomes and marker gene sequences.
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spelling pubmed-84779352021-09-29 The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China Zhang, Yi Liu, Ying Ge, Qijin Han, Kai Shi, Chengcheng Liu, Xin Mitochondrial DNA B Resour Mitogenome Announcement Smilax glabra is a perennial woody scandent shrub, of which the dried aerial tuber has been used as Chinese medicine. Here, we sequenced S. glabra and assembled its complete chloroplast (cp) genome. The genome is 157,889 bp in length and has a typical quadripartite structure. We annotated 131 genes, of which 84 were protein-coding genes, 37 were tRNAs and 8 were rRNA genes. Phylogenetic analysis of this genome with 26 representatives Liliales fully resolved S. glabra in a clade with S. china. The phylogenetic tree we constructed is largely consistent with recently published phylogenetic trees using both complete chloroplast genomes and marker gene sequences. Taylor & Francis 2021-09-27 /pmc/articles/PMC8477935/ /pubmed/34595338 http://dx.doi.org/10.1080/23802359.2021.1979431 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Yi
Liu, Ying
Ge, Qijin
Han, Kai
Shi, Chengcheng
Liu, Xin
The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China
title The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China
title_full The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China
title_fullStr The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China
title_full_unstemmed The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China
title_short The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China
title_sort complete chloroplast genome of a shrub species, smilax glabra (smilacaceae) from guangdong, china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8477935/
https://www.ncbi.nlm.nih.gov/pubmed/34595338
http://dx.doi.org/10.1080/23802359.2021.1979431
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