Cargando…
PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially t...
Autores principales: | , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8478209/ https://www.ncbi.nlm.nih.gov/pubmed/34473700 http://dx.doi.org/10.1371/journal.pcbi.1009301 |
_version_ | 1784576006066012160 |
---|---|
author | Pickles, Michael Cori, Anne Probert, William J. M. Sauter, Rafael Hinch, Robert Fidler, Sarah Ayles, Helen Bock, Peter Donnell, Deborah Wilson, Ethan Piwowar-Manning, Estelle Floyd, Sian Hayes, Richard J. Fraser, Christophe |
author_facet | Pickles, Michael Cori, Anne Probert, William J. M. Sauter, Rafael Hinch, Robert Fidler, Sarah Ayles, Helen Bock, Peter Donnell, Deborah Wilson, Ethan Piwowar-Manning, Estelle Floyd, Sian Hayes, Richard J. Fraser, Christophe |
author_sort | Pickles, Michael |
collection | PubMed |
description | Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially those related to the sexual network within which HIV transmission occurs. An individual-based model, which explicitly models sexual partnerships, is thus often the most natural type of model to choose. In this paper we present PopART-IBM, a computationally efficient individual-based model capable of simulating 50 years of an HIV epidemic in a large, high-prevalence community in under a minute. We show how the model calibrates within a Bayesian inference framework to detailed age- and sex-stratified data from multiple sources on HIV prevalence, awareness of HIV status, ART status, and viral suppression for an HPTN 071 (PopART) study community in Zambia, and present future projections of HIV prevalence and incidence for this community in the absence of trial intervention. |
format | Online Article Text |
id | pubmed-8478209 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-84782092021-09-29 PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial Pickles, Michael Cori, Anne Probert, William J. M. Sauter, Rafael Hinch, Robert Fidler, Sarah Ayles, Helen Bock, Peter Donnell, Deborah Wilson, Ethan Piwowar-Manning, Estelle Floyd, Sian Hayes, Richard J. Fraser, Christophe PLoS Comput Biol Research Article Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially those related to the sexual network within which HIV transmission occurs. An individual-based model, which explicitly models sexual partnerships, is thus often the most natural type of model to choose. In this paper we present PopART-IBM, a computationally efficient individual-based model capable of simulating 50 years of an HIV epidemic in a large, high-prevalence community in under a minute. We show how the model calibrates within a Bayesian inference framework to detailed age- and sex-stratified data from multiple sources on HIV prevalence, awareness of HIV status, ART status, and viral suppression for an HPTN 071 (PopART) study community in Zambia, and present future projections of HIV prevalence and incidence for this community in the absence of trial intervention. Public Library of Science 2021-09-02 /pmc/articles/PMC8478209/ /pubmed/34473700 http://dx.doi.org/10.1371/journal.pcbi.1009301 Text en © 2021 Pickles et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Pickles, Michael Cori, Anne Probert, William J. M. Sauter, Rafael Hinch, Robert Fidler, Sarah Ayles, Helen Bock, Peter Donnell, Deborah Wilson, Ethan Piwowar-Manning, Estelle Floyd, Sian Hayes, Richard J. Fraser, Christophe PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial |
title | PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial |
title_full | PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial |
title_fullStr | PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial |
title_full_unstemmed | PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial |
title_short | PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial |
title_sort | popart-ibm, a highly efficient stochastic individual-based simulation model of generalised hiv epidemics developed in the context of the hptn 071 (popart) trial |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8478209/ https://www.ncbi.nlm.nih.gov/pubmed/34473700 http://dx.doi.org/10.1371/journal.pcbi.1009301 |
work_keys_str_mv | AT picklesmichael popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT corianne popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT probertwilliamjm popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT sauterrafael popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT hinchrobert popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT fidlersarah popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT ayleshelen popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT bockpeter popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT donnelldeborah popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT wilsonethan popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT piwowarmanningestelle popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT floydsian popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT hayesrichardj popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT fraserchristophe popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial AT popartibmahighlyefficientstochasticindividualbasedsimulationmodelofgeneralisedhivepidemicsdevelopedinthecontextofthehptn071poparttrial |