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PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial

Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially t...

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Autores principales: Pickles, Michael, Cori, Anne, Probert, William J. M., Sauter, Rafael, Hinch, Robert, Fidler, Sarah, Ayles, Helen, Bock, Peter, Donnell, Deborah, Wilson, Ethan, Piwowar-Manning, Estelle, Floyd, Sian, Hayes, Richard J., Fraser, Christophe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8478209/
https://www.ncbi.nlm.nih.gov/pubmed/34473700
http://dx.doi.org/10.1371/journal.pcbi.1009301
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author Pickles, Michael
Cori, Anne
Probert, William J. M.
Sauter, Rafael
Hinch, Robert
Fidler, Sarah
Ayles, Helen
Bock, Peter
Donnell, Deborah
Wilson, Ethan
Piwowar-Manning, Estelle
Floyd, Sian
Hayes, Richard J.
Fraser, Christophe
author_facet Pickles, Michael
Cori, Anne
Probert, William J. M.
Sauter, Rafael
Hinch, Robert
Fidler, Sarah
Ayles, Helen
Bock, Peter
Donnell, Deborah
Wilson, Ethan
Piwowar-Manning, Estelle
Floyd, Sian
Hayes, Richard J.
Fraser, Christophe
author_sort Pickles, Michael
collection PubMed
description Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially those related to the sexual network within which HIV transmission occurs. An individual-based model, which explicitly models sexual partnerships, is thus often the most natural type of model to choose. In this paper we present PopART-IBM, a computationally efficient individual-based model capable of simulating 50 years of an HIV epidemic in a large, high-prevalence community in under a minute. We show how the model calibrates within a Bayesian inference framework to detailed age- and sex-stratified data from multiple sources on HIV prevalence, awareness of HIV status, ART status, and viral suppression for an HPTN 071 (PopART) study community in Zambia, and present future projections of HIV prevalence and incidence for this community in the absence of trial intervention.
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spelling pubmed-84782092021-09-29 PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial Pickles, Michael Cori, Anne Probert, William J. M. Sauter, Rafael Hinch, Robert Fidler, Sarah Ayles, Helen Bock, Peter Donnell, Deborah Wilson, Ethan Piwowar-Manning, Estelle Floyd, Sian Hayes, Richard J. Fraser, Christophe PLoS Comput Biol Research Article Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially those related to the sexual network within which HIV transmission occurs. An individual-based model, which explicitly models sexual partnerships, is thus often the most natural type of model to choose. In this paper we present PopART-IBM, a computationally efficient individual-based model capable of simulating 50 years of an HIV epidemic in a large, high-prevalence community in under a minute. We show how the model calibrates within a Bayesian inference framework to detailed age- and sex-stratified data from multiple sources on HIV prevalence, awareness of HIV status, ART status, and viral suppression for an HPTN 071 (PopART) study community in Zambia, and present future projections of HIV prevalence and incidence for this community in the absence of trial intervention. Public Library of Science 2021-09-02 /pmc/articles/PMC8478209/ /pubmed/34473700 http://dx.doi.org/10.1371/journal.pcbi.1009301 Text en © 2021 Pickles et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Pickles, Michael
Cori, Anne
Probert, William J. M.
Sauter, Rafael
Hinch, Robert
Fidler, Sarah
Ayles, Helen
Bock, Peter
Donnell, Deborah
Wilson, Ethan
Piwowar-Manning, Estelle
Floyd, Sian
Hayes, Richard J.
Fraser, Christophe
PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
title PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
title_full PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
title_fullStr PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
title_full_unstemmed PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
title_short PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
title_sort popart-ibm, a highly efficient stochastic individual-based simulation model of generalised hiv epidemics developed in the context of the hptn 071 (popart) trial
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8478209/
https://www.ncbi.nlm.nih.gov/pubmed/34473700
http://dx.doi.org/10.1371/journal.pcbi.1009301
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